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A3 Accurate, Adaptable, and Accessible Error Metrics for Predictive Models AATtools Reliability and Scoring Routines for the Approach-Avoidance Task ABACUS Apps Based Activities for Communicating and Understanding Statistics abbreviate Readable String Abbreviation abbyyR Access to Abbyy Optical Character Recognition [OCR] API abc Tools for Approximate Bayesian Computation [ABC] abc.data Data Only: Tools for Approximate Bayesian Computation [ABC] ABC.RAP Array Based CpG Region Analysis Pipeline abcADM Fit Accumulated Damage Models and Estimate Reliability using ABC ABCanalysis Computed ABC Analysis abclass Angle-Based Large-Margin Classifiers ABCoptim Implementation of Artificial Bee Colony [ABC] Optimization ABCp2 Approximate Bayesian Computational Model for Estimating P2 abcrf Approximate Bayesian Computation via Random Forests abcrlda Asymptotically Bias-Corrected Regularized Linear Discriminant Analysis abctools Tools for ABC Analyses abd The Analysis of Biological Data abdiv Alpha and Beta Diversity Measures abe Augmented Backward Elimination abess Fast Best Subset Selection abglasso Adaptive Bayesian Graphical Lasso ABHgenotypeR Easy Visualization of ABH Genotypes abind Combine Multidimensional Arrays abjData Databases Used Routinely by the Brazilian Jurimetrics Association abjutils Useful Tools for Jurimetrical Analysis Used by the Brazilian Jurimetrics Association abmR Agent-Based Models in R abn Modelling Multivariate Data with Additive Bayesian Networks abnormality Measure a Subject's Abnormality with Respect to a Reference Population abodOutlier Angle-Based Outlier Detection ABPS The Abnormal Blood Profile Score to Detect Blood Doping abstr R Interface to the A/B Street Transport System Simulation Software abstractr An R-Shiny Application for Creating Visual Abstracts abtest Bayesian A/B Testing abundant High-Dimensional Principal Fitted Components and Abundant Regression Ac3net Inferring Directional Conservative Causal Core Gene Networks ACA Abrupt Change-Point or Aberration Detection in Point Series academictwitteR Access the Twitter Academic Research Product Track V2 API Endpoint acc Exploring Accelerometer Data acca A Canonical Correlation Analysis with Inferential Guaranties accelerometry Functions for Processing Accelerometer Data accelmissing Missing Value Imputation for Accelerometer Data accept The Acute COPD Exacerbation Prediction Tool [ACCEPT] AcceptanceSampling Creation and Evaluation of Acceptance Sampling Plans accessibility Transport Accessibility Measures accessrmd Improving the Accessibility of 'rmarkdown' Documents accrual Bayesian Accrual Prediction accrualPlot Accrual Plots and Predictions for Clinical Trials accSDA Accelerated Sparse Discriminant Analysis accucor Natural Abundance Correction of Mass Spectrometer Data ACDC Analysis of Congruent Diversification Classes acdcR Agro-Climatic Data by County ACDm Tools for Autoregressive Conditional Duration Models ace2fastq ACE File to FASTQ Converter acebayes Optimal Bayesian Experimental Design using the ACE Algorithm aceEditor The 'Ace' Editor as a HTML Widget ACEP Analisis Computacional de Eventos de Protesta acepack ACE and AVAS for Selecting Multiple Regression Transformations ACEsearch 'ACE' Search Engine API ACEsimFit ACE Kin Pair Data Simulations and Model Fitting ACEt Estimating Dynamic Heritability and Twin Model Comparison acfMPeriod Robust Estimation of the ACF from the M-Periodogram acid Analysing Conditional Income Distributions acled.api Automated Retrieval of ACLED Conflict Event Data ACNE Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization acnr Annotated Copy-Number Regions acopula Modelling Dependence with Multivariate Archimax [or any User-Defined Continuous] Copulas AcousticNDLCodeR Coding Sound Files for Use with NDL acp Autoregressive Conditional Poisson acroname Engine for Acronyms and Initialisms AcrossTic A Cost-Minimal Regular Spanning Subgraph with TreeClust acrt Autocorrelation Robust Testing acs Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census acss Algorithmic Complexity for Short Strings acss.data Data Only: Algorithmic Complexity of Short Strings [Computed via Coding Theorem Method] ACSWR A Companion Package for the Book "A Course in Statistics with R" act Aligned Corpus Toolkit ACTCD Asymptotic Classification Theory for Cognitive Diagnosis ActCR Extract Circadian Rhythms Metrics from Actigraphy Data actel Acoustic Telemetry Data Analysis ActFrag Activity Fragmentation Metrics Extracted from Minute Level Activity Data actilifecounts Generate Activity Counts from Raw Accelerometer Data activAnalyzer A 'Shiny' App to Analyze Accelerometer-Measured Daily Physical Behavior Data activatr Utilities for Parsing and Plotting Activities ActiveDriver Finding Cancer Driver Proteins with Enriched Mutations in Post-Translational Modification Sites ActiveDriverWGS A Driver Discovery Tool for Cancer Whole Genomes activegp Gaussian Process Based Design and Analysis for the Active Subspace Method ActivePathways Integrative Pathway Enrichment Analysis of Multivariate Omics Data activity Animal Activity Statistics activityGCMM Circular Mixed Effect Mixture Models of Animal Activity Patterns ActivityIndex Activity Index Calculation using Raw 'Accelerometry' Data activPAL Advanced Processing and Chart Generation from activPAL Events Files actogrammr Read in Activity Data and Plot Actograms actuar Actuarial Functions and Heavy Tailed Distributions actuaryr Develop Actuarial Models actxps Create Actuarial Experience Studies: Prepare Data, Summarize Results, and Create Reports AcuityView A Package for Displaying Visual Scenes as They May Appear to an Animal with Lower Acuity acumos 'Acumos' R Interface ACV Optimal Out-of-Sample Forecast Evaluation and Testing under Stationarity ACWR Acute Chronic Workload Ratio Calculation ada The R Package Ada for Stochastic Boosting adabag Applies Multiclass AdaBoost.M1, SAMME and Bagging adace Estimator of the Adherer Average Causal Effect adagio Discrete and Global Optimization Routines adaHuber Adaptive Huber Estimation and Regression adamethods Archetypoid Algorithms and Anomaly Detection adana Adaptive Nature-Inspired Algorithms for Hybrid Genetic Optimization AdapSamp Adaptive Sampling Algorithms adapt4pv Adaptive Approaches for Signal Detection in Pharmacovigilance adaptalint Check Code Style Painlessly adaptDiag Bayesian Adaptive Designs for Diagnostic Trials AdaptFitOS Adaptive Semiparametric Additive Regression with Simultaneous Confidence Bands and Specification Tests AdaptGauss Gaussian Mixture Models [GMM] adaptiveGPCA Adaptive Generalized PCA AdaptiveSparsity Adaptive Sparsity Models adaptivetau Tau-Leaping Stochastic Simulation adaptIVPT Adaptive Bioequivalence Design for In-Vitro Permeation Tests adaptMCMC Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler adaptMT Adaptive P-Value Thresholding for Multiple Hypothesis Testing with Side Information adaptr Adaptive Trial Simulator ADAPTS Automated Deconvolution Augmentation of Profiles for Tissue Specific Cells adaptsmoFMRI Adaptive Smoothing of FMRI Data adaptTest Adaptive Two-Stage Tests AdaSampling Adaptive Sampling for Positive Unlabeled and Label Noise Learning ADCT Adaptive Design in Clinical Trials add2ggplot Add to 'ggplot2' addhaz Binomial and Multinomial Additive Hazard Models addhazard Fit Additive Hazards Models for Survival Analysis addinsJoaoMelo Addins Made of Joao Melo addinslist Discover and Install Useful RStudio Addins addinsOutline 'RStudio' Addins for Show Outline of a R Markdown/'LaTeX' Project additive Bindings for Additive TidyModels additiveDEA Additive Data Envelopment Analysis Models additivityTests Additivity Tests in the Two Way Anova with Single Sub-Class Numbers addreg Additive Regression for Discrete Data addScales Adds Labeled Center Line and Scale Lines/Regions to Trellis Plots ADDT Analysis of Accelerated Destructive Degradation Test Data ade4 Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences ade4TkGUI 'ade4' Tcl/Tk Graphical User Interface adea Alternate DEA Package adegenet Exploratory Analysis of Genetic and Genomic Data adegraphics An S4 Lattice-Based Package for the Representation of Multivariate Data adehabitatHR Home Range Estimation adehabitatHS Analysis of Habitat Selection by Animals adehabitatLT Analysis of Animal Movements adehabitatMA Tools to Deal with Raster Maps adephylo Exploratory Analyses for the Phylogenetic Comparative Method adepro A 'shiny' Application for the [Audio-]Visualization of Adverse Event Profiles adept Adaptive Empirical Pattern Transformation adeptdata Accelerometry Data Sets AdequacyModel Adequacy of Probabilistic Models and General Purpose Optimization ADER Data Analysis in Ecology adespatial Multivariate Multiscale Spatial Analysis adfExplorer Import from and Export to Amiga Disk Files ADGofTest Anderson-Darling GoF test adheRenceRX Assess Medication Adherence from Pharmaceutical Claims Data AdhereR Adherence to Medications AdhereRViz Adherence to Medications adimpro Adaptive Smoothing of Digital Images adiv Analysis of Diversity adjclust Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix adjROC Computing Sensitivity at a Fix Value of Specificity and Vice Versa adjSURVCI Parameter and Adjusted Probability Estimation for Right-Censored Data adjustedcranlogs Remove Automated and Repeated Downloads from 'RStudio' 'CRAN' Download Logs adjustedCurves Confounder-Adjusted Survival Curves and Cumulative Incidence Functions adklakedata Adirondack Long-Term Lake Data adlift An Adaptive Lifting Scheme Algorithm admiral ADaM in R Asset Library admiral.test Test Data for the 'admiral' Package admiraldev Development Tools for the Admiral Package Family admiralonco Oncology Extension Package for ADaM in 'R' Asset Library admisc Adrian Dusa's Miscellaneous AdMit Adaptive Mixture of Student-t Distributions admix Package Admix for Admixture [aka Contamination] Models admixr An Interface for Running 'ADMIXTOOLS' Analyses ADMM Algorithms using Alternating Direction Method of Multipliers admmDensestSubmatrix Alternating Direction Method of Multipliers to Solve Dense Dubmatrix Problem ADMMnet Regularized Model with Selecting the Number of Non-Zeros ADMMsigma Penalized Precision Matrix Estimation via ADMM ADMUR Ancient Demographic Modelling Using Radiocarbon adnuts No-U-Turn MCMC Sampling for 'ADMB' Models adobeanalyticsr R Client for 'Adobe Analytics' API 2.0 adoptr Adaptive Optimal Two-Stage Designs in R ADP Adoption Probability, Triers and Users Rate of a New Product ADPclust Fast Clustering Using Adaptive Density Peak Detection ADPF Use Least Squares Polynomial Regression and Statistical Testing to Improve Savitzky-Golay adpss Design and Analysis of Locally or Globally Efficient Adaptive Designs ads Spatial Point Patterns Analysis adsDataHubR Google Ads Data Hub API Client AdvancedBasketballStats Advanced Basketball Statistics AdvBinomApps Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information AdvDif4 Solving 1D Advection Bi-Flux Diffusion Equation adventr Interactive R Tutorials to Accompany Field [2016], "An Adventure in Statistics" ADVICE Automatic Direct Variable Selection via Interrupted Coefficient Estimation adw Angular Distance Weighting Interpolation adwave Wavelet Analysis of Genomic Data from Admixed Populations adwordsR Access the 'Google Adwords' API AEDForecasting Change Point Analysis in ARIMA Forecasting AEenrich Adverse Event Enrichment Tests AEP Statistical Modelling for Asymmetric Exponential Power Distribution AER Applied Econometrics with R AeRobiology A Computational Tool for Aerobiological Data AeroSampleR Estimate Aerosol Particle Collection Through Sample Lines AF Model-Based Estimation of Confounder-Adjusted Attributable Fractions afc Generalized Discrimination Score afdx Diagnosis Performance Using Attributable Fraction afex Analysis of Factorial Experiments affinity Raster Georeferencing, Grid Affine Transforms, Cell Abstraction affinitymatrix Estimation of Affinity Matrix affluenceIndex Affluence [Richness] Indices AFheritability The Attributable Fraction [AF] Described as a Function of Disease Heritability, Prevalence and Intervention Specific Factors AFM Atomic Force Microscope Image Analysis afmToolkit Functions for Atomic Force Microscope Force-Distance Curves Analysis afpt Tools for Modelling of Animal Flight Performance AFR Toolkit for Regression Analysis of Kazakhstan Banking Sector Data africamonitor Africa Macroeconomic Monitor Database API aftgee Accelerated Failure Time Model with Generalized Estimating Equations afthd Accelerated Failure Time for High Dimensional Data with MCMC afttest Model Diagnostics for Accelerated Failure Time Models ag5Tools Toolbox for Downloading and Extracting Copernicus AgERA5 Data AGD Analysis of Growth Data ageg Age Grouping Functions AggregateR Aggregate Numeric, Date and Categorical Variables aggregation p-Value Aggregation Methods AGHmatrix Relationship Matrices for Diploid and Autopolyploid Species aghq Adaptive Gauss Hermite Quadrature for Bayesian Inference aglm Accurate Generalized Linear Model agop Aggregation Operators and Preordered Sets AGPRIS AGricultural PRoductivity in Space agRee Various Methods for Measuring Agreement AgreementInterval Agreement Interval of Two Measurement Methods agricolae Statistical Procedures for Agricultural Research agricolaeplotr Visualization of Design of Experiments from the 'agricolae' Package agridat Agricultural Datasets agrifeature Agriculture Image Feature agriTutorial Tutorial Analysis of Some Agricultural Experiments agriwater Evapotranspiration and Energy Fluxes Spatial Analysis agrmt Calculate Concentration and Dispersion in Ordered Rating Scales agroclim Climatic Indices for Agriculture AgroR Experimental Statistics and Graphics for Agricultural Sciences AgroReg Regression Analysis Linear and Nonlinear for Agriculture agrostab Stability Analysis for Agricultural Research AgroTech Data Analysis of Pesticide Application Technology AGSDest Estimation in Adaptive Group Sequential Trials agtboost Adaptive and Automatic Gradient Boosting Computations agua 'tidymodels' Integration with 'h2o' agvgd An R Implementation of the 'Align-GVGD' Method ahaz Regularization for Semiparametric Additive Hazards Regression AHM Additive Heredity Model: Method for the Mixture-of-Mixtures Experiments AHMbook Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2 ahMLE Methods for the Additive Hazard Model ahnr An Implementation of the Artificial Hydrocarbon Networks AhoCorasickTrie Fast Searching for Multiple Keywords in Multiple Texts AHPhybrid AHP Hybrid Method ahpsurvey Analytic Hierarchy Process for Survey Data ahptopsis2n Hybrid Method for Multiple Criteria Decision-Making [MCDM] AHSurv Flexible Parametric Accelerated Hazards Models aibd Attraction Indian Buffet Distribution aIc Testing for Compositional Pathologies in Datasets AICcmodavg Model Selection and Multimodel Inference Based on [Q]AIC[c] AID Box-Cox Power Transformation aidar Tools for Reading AIDA Files aif360 Help Detect and Mitigate Bias in Machine Learning Models AIG Automatic Item Generator aimPlot Create Pie Like Plot for Completeness aimsir17 Irish Weather Observing Stations Hourly Records for 2017 AIPW Augmented Inverse Probability Weighting aire.zmvm Download Mexico City Pollution, Wind, and Temperature Data airGR Suite of GR Hydrological Models for Precipitation-Runoff Modelling airGRdatassim Ensemble-Based Data Assimilation with GR Hydrological Models airGRiwrm 'airGR' Integrated Water Resource Management airGRteaching Teaching Hydrological Modelling with the GR Rainfall-Runoff Models ['Shiny' Interface Included] aiRly R Wrapper for 'Airly' API AirMonitor Air Quality Data Analysis airnow Retrieve 'AirNow' Air Quality Observations and Forecasts airportr Convenience Tools for Working with Airport Data airports Data on Airports airqualityES Air Quality Measurements in Spain from 2011 to 2018 airr AIRR Data Representation Reference Library airt Evaluation of Algorithm Collections Using Item Response Theory aiRthermo Atmospheric Thermodynamics and Visualization aisoph Additive Isotonic Proportional Hazards Model ajv Another JSON Schema Validator akc Automatic Knowledge Classification Ake Associated Kernel Estimations akiFlagger Flags Acute Kidney Injury [AKI] akima Interpolation of Irregularly and Regularly Spaced Data akmbiclust Alternating K-Means Biclustering akmedoids Anchored Kmedoids for Longitudinal Data Clustering alabama Constrained Nonlinear Optimization alakazam Immunoglobulin Clonal Lineage and Diversity Analysis ALassoSurvIC Adaptive Lasso for the Cox Regression with Interval Censored and Possibly Left Truncated Data albatross PARAFAC Analysis of Fluorescence Excitation-Emission Matrices albopictus Age-Structured Population Dynamics Model ald The Asymmetric Laplace Distribution ALDqr Quantile Regression Using Asymmetric Laplace Distribution aldvmm Adjusted Limited Dependent Variable Mixture Models ALEPlot Accumulated Local Effects [ALE] Plots and Partial Dependence [PD] Plots aLFQ Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data alfr Connectivity to 'Alfresco' Content Management Repositories alfred Downloading Time Series from ALFRED Database for Various Vintages algaeClassify Determine Phytoplankton Functional Groups Based on Functional Traits AlgDesign Algorithmic Experimental Design AlgebraicHaploPackage Haplotype Two Snips Out of a Paired Group of Patients algo Implement an Address Search Auto Completion Menu on 'Shiny' Text Inputs Using the 'Algolia Places' 'Javascript' Library algorithmia Allows you to Easily Interact with the Algorithmia Platform aliases2entrez Converts Human gene symbols to entrez IDs alkahest Pre-Processing XY Data from Experimental Methods allcontributors Acknowledge all Contributors to a Project alleHap Allele Imputation and Haplotype Reconstruction from Pedigree Databases allelematch Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present AlleleRetain Allele Retention, Inbreeding, and Demography AlleleShift Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change allestimates Effect Estimates from All Models Allspice RNA-Seq Profile Classifier alluvial Alluvial Diagrams almanac Tools for Working with Recurrence Rules alookr Model Classifier for Binary Classification alpaca Fit GLM's with High-Dimensional k-Way Fixed Effects alphabetr Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells alphaci Confidence Intervals for Coefficient Alpha and Standardized Alpha alphahull Generalization of the Convex Hull of a Sample of Points in the Plane AlphaHull3D Alpha Hull Computation alphaOutlier Obtain Alpha-Outlier Regions for Well-Known Probability Distributions AlphaPart Partition/Decomposition of Breeding Values by Paths of Information alphashape3d Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud AlphaSimR Breeding Program Simulations alphastable Inference for Stable Distribution alphavantager Lightweight R Interface to the Alpha Vantage API alqrfe Adaptive Lasso Quantile Regression with Fixed Effects alr4 Data to Accompany Applied Linear Regression 4th Edition ALS Multivariate Curve Resolution Alternating Least Squares [MCR-ALS] ALSCPC Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form ALSM Companion to Applied Linear Statistical Models altadata API Wrapper for Altadata.io altair Interface to 'Altair' altdoc Use 'Docsify.js', 'Docute', or 'Mkdocs' to Generate a Package Documentation altfuelr Provides an Interface to the NREL Alternate Fuels Locator altmeta Alternative Meta-Analysis Methods ALTopt Optimal Experimental Designs for Accelerated Life Testing altR2 Alternative Estimators to Adjusted R-Squared ALUES Agricultural Land Use Evaluation System amanida Meta-Analysis for Non-Integral Data amanpg Alternating Manifold Proximal Gradient Method for Sparse PCA amap Another Multidimensional Analysis Package amapGeocode An Interface to the 'AutoNavi Maps' API Geocoding Services amapro Thin Wrapper for Mapping Library 'AMap' by 'AutoNavi' AMAPVox LiDAR Data Voxelisation amazonadsR Get Amazon Ads Data via the 'Windsor.ai' API ambhasGW Ground Water Modelling ambient A Generator of Multidimensional Noise ambit Simulation and Estimation of Ambit Processes AMCP A Model Comparison Perspective AMCTestmakeR Generate LaTeX Code for Auto-Multiple-Choice [AMC] Amelia A Program for Missing Data amelie Anomaly Detection with Normal Probability Functions amen Additive and Multiplicative Effects Models for Networks and Relational Data AmericanCallOpt This package includes pricing function for selected American call options with underlying assets that generate payouts amerifluxr Interface to 'AmeriFlux' Data Services amerika American Politics-Inspired Color Palette Generator AmesHousing The Ames Iowa Housing Data AmigaFFH Commodore Amiga File Format Handler ammiBayes Bayesian Ammi Model for Continuous Data AMModels Adaptive Management Model Manager AmmoniaConcentration Un-Ionized Ammonia Concentration aMNLFA Automated Moderated Nonlinear Factor Analysis Using 'M-plus' AmoudSurv Tractable Parametric Odds-Based Regression Models amp Statistical Test for the Multivariate Point Null Hypotheses ampd An Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi-Periodic Signals AmpGram Prediction of Antimicrobial Peptides ampir Predict Antimicrobial Peptides AMPLE Shiny Apps to Support Capacity Building on Harvest Control Rules AmpliconDuo Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts AMR Antimicrobial Resistance Data Analysis amt Animal Movement Tools AmyloGram Prediction of Amyloid Proteins AnaCoDa Analysis of Codon Data under Stationarity using a Bayesian Framework Anaconda Targeted Differential and Global Enrichment Analysis of Taxonomic Rank by Shared Asvs anacor Simple and Canonical Correspondence Analysis analogsea Interface to 'Digital Ocean' analogue Analogue and Weighted Averaging Methods for Palaeoecology analogueExtra Additional Functions for Use with the Analogue Package analyzer Data Analysis and Automated R Notebook Generation anapuce Tools for Microarray Data Analysis AncestryMapper Assigning Ancestry Based on Population References AnchorRegression Perform AnchorRegression and Construct Natural-Language Lists with Internationalization Andromeda Asynchronous Disk-Based Representation of Massive Data andurinha Make Spectroscopic Data Processing Easier anesrake ANES Raking Implementation AnglerCreelSurveySimulation Simulate a Bus Route Creel Survey of Anglers angstroms Tools for 'ROMS' the Regional Ocean Modeling System aniDom Inferring Dominance Hierarchies and Estimating Uncertainty anim.plots Simple Animated Plots for R animalEKF Extended Kalman Filters for Animal Movement AnimalHabitatNetwork Networks Characterising the Physical Configurations of Animal Habitats animalTrack Animal track reconstruction for high frequency 2-dimensional [2D] or 3-dimensional [3D] movement data animaltracker Animal Tracker animation A Gallery of Animations in Statistics and Utilities to Create Animations animint2 Animated Interactive Grammar of Graphics animl A Collection of ML Tools for Conservation Research anipaths Animation of Multiple Trajectories with Uncertainty aniview Animate Shiny and R Markdown Content when it Comes into View anMC Compute High Dimensional Orthant Probabilities ANN2 Artificial Neural Networks for Anomaly Detection anndata 'anndata' for R annotater Annotate Package Load Calls AnnotationBustR Extract Subsequences from GenBank Annotations AnnuityRIR Annuity Random Interest Rates anocva A Non-Parametric Statistical Test to Compare Clustering Structures ANOM Analysis of Means anomalize Tidy Anomaly Detection anomaly Detecting Anomalies in Data ANOVAIREVA Interactive Document for Working with Analysis of Variance ANOVAreplication Test ANOVA Replications by Means of the Prior Predictive p-Value ANOVAShiny Interactive Document for Working with Analysis of Variance ANOVAShiny2 Interactive Document for Working with Analysis of Variance anovir Analysis of Virulence anscombiser Create Datasets with Identical Summary Statistics AntAngioCOOL Anti-Angiogenic Peptide Prediction antaresEditObject Edit an 'Antares' Simulation antaresProcessing 'Antares' Results Processing antaresRead Import, Manipulate and Explore the Results of an 'Antares' Simulation antaresViz Antares Visualizations anthro Computation of the WHO Child Growth Standards anthroplus Computation of the WHO 2007 References for School-Age Children and Adolescents [5 to 19 Years] AnthropMMD An R Package for Smith's Mean Measure of Divergence [MMD] Anthropometry Statistical Methods for Anthropometric Data AntibodyTiters Antibody Titer Analysis of Vaccinated Patients anticlust Subset Partitioning via Anticlustering antitrust Tools for Antitrust Practitioners antiword Extract Text from Microsoft Word Documents AntMAN Anthology of Mixture Analysis Tools ANTs Animal Network Toolkit Software anybadger Create Custom Pipeline Badges anyflights Query 'nycflights13'-Like Air Travel Data for Given Years and Airports anyLib Install and Load Any Package from CRAN, Bioconductor or Github anytime Anything to 'POSIXct' or 'Date' Converter ao Alternating Optimization aod Analysis of Overdispersed Data aods3 Analysis of Overdispersed Data using S3 Methods aoos Another Object Orientation System aopdata Data from the 'Access to Opportunities Project [AOP]' Aoptbdtvc A-Optimal Block Designs for Comparing Test Treatments with Controls aoristic Generates Aoristic Probability Distributions aorsf Accelerated Oblique Random Survival Forests aos Animate on Scroll Library for 'shiny' AOV1R Inference in the Balanced One-Way ANOVA Model with Random Factor AovBay Classic, Nonparametric and Bayesian One-Way Analysis of Variance Panel apa Format Outputs of Statistical Tests According to APA Guidelines apache.sedona R Interface for Apache Sedona ApacheLogProcessor Process the Apache Web Server Log Files apaTables Create American Psychological Association [APA] Style Tables apaText Create R Markdown Text for Results in the Style of the American Psychological Association [APA] APAtree Computation of the 'Area Potentially Available' [APA] to Trees apc Age-Period-Cohort Analysis APCanalysis Analysis of Unreplicated Orthogonal Experiments using All Possible Comparisons apcf Adapted Pair Correlation Function APCI A New Age-Period-Cohort Model for Describing and Investigating Inter-Cohort Differences and Life Course Dynamics apcluster Affinity Propagation Clustering aPCoA Covariate Adjusted PCoA Plot APCtools Routines for Descriptive and Model-Based APC Analysis apdesign An Implementation of the Additive Polynomial Design Matrix ape Analyses of Phylogenetics and Evolution apercu Quick Look at your Data apex Phylogenetic Methods for Multiple Gene Data apexcharter Create Interactive Chart with the JavaScript 'ApexCharts' Library APFr Multiple Testing Approach using Average Power Function [APF] and Bayes FDR Robust Estimation APfun Geo-Processing Helper Functions aphid Analysis with Profile Hidden Markov Models aphylo Statistical Inference and Prediction of Annotations in Phylogenetic Trees api2lm Functions and Data Sets for the Book "A Progressive Introduction to Linear Models" APIS Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents apisensr Interface to 'episensr' for Sensitivity Analysis of Epidemiological Results aplore3 Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" [3rd Ed., 2013] aplot Decorate a 'ggplot' with Associated Information aplpack Another Plot Package: 'Bagplots', 'Iconplots', 'Summaryplots', Slider Functions and Others APML0 Augmented and Penalized Minimization Method L0 apng Convert Png Files into Animated Png apollo Tools for Choice Model Estimation and Application APPEstimation Adjusted Prediction Model Performance Estimation appleadsR Get Apple Search Ads Data via the 'Windsor.ai' API appler 'Apple App Store' and 'iTunes' Data Extraction applicable A Compilation of Applicability Domain Methods AppliedPredictiveModeling Functions and Data Sets for 'Applied Predictive Modeling' appnn Amyloid Propensity Prediction Neural Network approximator Bayesian Prediction of Complex Computer Codes approxmatch Approximately Optimal Fine Balance Matching with Multiple Groups approxOT Approximate and Exact Optimal Transport Methods aprean3 Datasets from Draper and Smith "Applied Regression Analysis" [3rd Ed., 1998] aprof Amdahl's Profiler, Directed Optimization Made Easy apsimx Inspect, Read, Edit and Run 'APSIM' "Next Generation" and 'APSIM' Classic apt Asymmetric Price Transmission APtools Average Positive Predictive Values [AP] for Binary Outcomes and Censored Event Times apTreeshape Analyses of Phylogenetic Treeshape apyramid Visualize Population Pyramids Aggregated by Age AQEval Air Quality Evaluation AQLSchemes Retrieving Acceptance Sampling Schemes aqp Algorithms for Quantitative Pedology AquaBPsim Aquaculture Breeding Program Simulation AQuadtree Confidentiality of Spatial Point Data AquaEnv Integrated Development Toolbox for Aquatic Chemical Model Generation aquodom Access to Aquo domaintables from R [Dutch] AR Another Look at the Acceptance-Rejection Method ar.matrix Simulate Auto Regressive Data from Precision Matricies arabic2kansuji Convert Arabic Numerals to Kansuji arabicStemR Arabic Stemmer for Text Analysis arakno ARAchnid KNowledge Online ArArRedux Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data arc Association Rule Classification ARCensReg Fitting Univariate Censored Linear Regression Model with Autoregressive Errors ArchaeoChron Bayesian Modeling of Archaeological Chronologies ArchaeoPhases Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal' ArchaeoPhases.dataset Data Sets for 'ArchaeoPhases' Vignettes archdata Example Datasets from Archaeological Research archeofrag Refitting and Spatial Analysis in Archaeology archetypal Finds the Archetypal Analysis of a Data Frame archetyper An Archetype for Data Mining and Data Science Projects archetypes Archetypal Analysis aRchi Quantitative Structural Model ['QSM'] Treatment for Tree Architecture archiDART Plant Root System Architecture Analysis Using DART and RSML Files archive Multi-Format Archive and Compression Support archiveRetriever Retrieve Archived Web Pages from the 'Internet Archive' archivist Tools for Storing, Restoring and Searching for R Objects archivist.github Tools for Archiving, Managing and Sharing R Objects via GitHub ArCo Artificial Counterfactual Package ARCokrig Autoregressive Cokriging Models for Multifidelity Codes arcpullr Pull Data from an 'ArcGIS REST' API arctools Processing and Physical Activity Summaries of Minute Level Activity Data ArDec Time Series Autoregressive-Based Decomposition ARDL ARDL, ECM and Bounds-Test for Cointegration ardl.nardl Linear and Nonlinear Autoregressive Distributed Lag Models areabiplot Area Biplot areal Areal Weighted Interpolation areaplot Plot Stacked Areas and Confidence Bands as Filled Polygons arena2r Plots, Summary Statistics and Tools for Arena Simulation Users arenar Arena for the Exploration and Comparison of any ML Models arfima Fractional ARIMA [and Other Long Memory] Time Series Modeling argo Accurate Estimation of Influenza Epidemics using Google Search Data argoFloats Analysis of Oceanographic Argo Floats argon2 Secure Password Hashing argonDash Argon Shiny Dashboard Template argonR R Interface to Argon HTML Design argosfilter Argos Locations Filter argparse Command Line Optional and Positional Argument Parser argparser Command-Line Argument Parser argus Random Variate Generator for the Argus Distribution ARHT Adaptable Regularized Hotelling's T^2 Test for High-Dimensional Data ari Automated R Instructor ARIbrain All-Resolution Inference aricode Efficient Computations of Standard Clustering Comparison Measures ARIMAANN Time Series Forecasting using ARIMA-ANN Hybrid Model arkdb Archive and Unarchive Databases Using Flat Files arkhe Tools for Cleaning Rectangular Data arm Data Analysis Using Regression and Multilevel/Hierarchical Models armada A Statistical Methodology to Select Covariates in High-Dimensional Data under Dependence armspp Adaptive Rejection Metropolis Sampling [ARMS] via 'Rcpp' arnie "Arnie" box office records 1982-2014 AROC Covariate-Adjusted Receiver Operating Characteristic Curve Inference aroma.affymetrix Analysis of Large Affymetrix Microarray Data Sets aroma.apd A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated] aroma.cn Copy-Number Analysis of Large Microarray Data Sets aroma.core Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework Arothron Geometric Morphometric Methods and Virtual Anthropology Tools ARPALData Retrieving, Managing and Analysing Air Quality and Weather Data for Lombardy [Italy] using ARPA Lombardia Open Database ARpLMEC Censored Mixed-Effects Models with Different Correlation Structures ARPobservation Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes arpr Advanced R Pipes aRpsDCA Arps Decline Curve Analysis in R arrangements Fast Generators and Iterators for Permutations, Combinations, Integer Partitions and Compositions arrApply Apply a Function to a Margin of an Array arrayhelpers Convenience Functions for Arrays arrow Integration to 'Apache' 'Arrow' ars Adaptive Rejection Sampling arse Area of Resilience to Stress Event arsenal An Arsenal of 'R' Functions for Large-Scale Statistical Summaries ART Aligned Rank Transform for Nonparametric Factorial Analysis artfima ARTFIMA Model Estimation arthistory Art History Textbook Data ARTofR To Insert Title, Divider, and Block of Comments ARTool Aligned Rank Transform ARTP2 Pathway and Gene-Level Association Test aRtsy Generative Art with 'ggplot2' arules Mining Association Rules and Frequent Itemsets arulesCBA Classification Based on Association Rules arulesNBMiner Mining NB-Frequent Itemsets and NB-Precise Rules arulesSequences Mining Frequent Sequences arulesViz Visualizing Association Rules and Frequent Itemsets aRxiv Interface to the arXiv API asaur Data Sets for "Applied Survival Analysis Using R"" asbio A Collection of Statistical Tools for Biologists ascentTraining Ascent Training Datasets ascii Export R Objects to Several Markup Languages asciicast Create 'Ascii' Screen Casts from R Scripts asciichartr Lightweight ASCII Line Graphs asciiruler Render an ASCII Ruler asciiSetupReader Reads Fixed-Width ASCII Data Files [.txt or .dat] that Have Accompanying Setup Files [.sps or .sas] ascotraceR Simulate the Spread of Ascochyta Blight in Chickpea asd Simulations for Adaptive Seamless Designs asdreader Reading ASD Binary Files in R ASGS.foyer Interface to the Australian Statistical Geography Standard ash David Scott's ASH Routines ashr Methods for Adaptive Shrinkage, using Empirical Bayes asht Applied Statistical Hypothesis Tests AsioHeaders 'Asio' C++ Header Files ASIP Automated Satellite Image Processing askpass Safe Password Entry for R, Git, and SSH aslib Interface to the Algorithm Selection Benchmark Library ASMap Linkage Map Construction using the MSTmap Algorithm asnipe Animal Social Network Inference and Permutations for Ecologists aSPC An Adaptive Sum of Powered Correlation Test [aSPC] for Global Association Between Two Random Vectors aspect A General Framework for Multivariate Analysis with Optimal Scaling aspi Analysis of Symmetry of Parasitic Infections aspline Spline Regression with Adaptive Knot Selection aSPU Adaptive Sum of Powered Score Test asremlPlus Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction Differences ASSA Applied Singular Spectrum Analysis [ASSA] assert Validate Function Arguments assertable Verbose Assertions for Tabular Data [Data.frames and Data.tables] assertive Readable Check Functions to Ensure Code Integrity assertive.base A Lightweight Core of the 'assertive' Package assertive.code Assertions to Check Properties of Code assertive.data Assertions to Check Properties of Data assertive.data.uk Assertions to Check Properties of Strings assertive.data.us Assertions to Check Properties of Strings assertive.datetimes Assertions to Check Properties of Dates and Times assertive.files Assertions to Check Properties of Files assertive.matrices Assertions to Check Properties of Matrices assertive.models Assertions to Check Properties of Models assertive.numbers Assertions to Check Properties of Numbers assertive.properties Assertions to Check Properties of Variables assertive.reflection Assertions for Checking the State of R assertive.sets Assertions to Check Properties of Sets assertive.strings Assertions to Check Properties of Strings assertive.types Assertions to Check Types of Variables assertr Assertive Programming for R Analysis Pipelines assertthat Easy Pre and Post Assertions AssetAllocation Backtesting Simple Asset Allocation Strategies AssetCorr Estimating Asset Correlations from Default Data AssetPricing Optimal Pricing of Assets with Fixed Expiry Date assignPOP Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework assignR Infer Geographic Origin from Isotopic Data assist A Suite of R Functions Implementing Spline Smoothing Techniques ASSISTant Adaptive Subgroup Selection in Group Sequential Trials AssocAFC Allele Frequency Comparison assocInd Implements New and Existing Association Indices for Constructing Animal Social Networks AssocTests Genetic Association Studies assortnet Calculate the Assortativity Coefficient of Weighted and Binary Networks AST Age-Spatial-Temporal Model ast2ast Translates an R Function to a C++ Function aster Aster Models aster2 Aster Models asteRisk Computation of Satellite Position AsthmaNHANES Asthma Data Sets from NHANES astrochron A Computational Tool for Astrochronology astrodatR Astronomical Data astroFns Astronomy: Time and Position Functions, Misc. Utilities astsa Applied Statistical Time Series Analysis ASV Stochastic Volatility Models with or without Leverage AsyK Kernel Density Estimation asylum Data on Asylum and Resettlement for the UK asymLD Asymmetric Linkage Disequilibrium [ALD] for Polymorphic Genetic Data AsymmetricSORDs Asymmetric Second Order Rotatable Designs [AsymmetricSORDs] asymmetry Multidimensional Scaling of Asymmetric Proximities asymmetry.measures Asymmetry Measures for Probability Density Functions asympTest A Simple R Package for Classical Parametric Statistical Tests and Confidence Intervals in Large Samples asymptor Estimate Asymptomatic Cases via Capture/Recapture Methods async Asynchronous Code Constructs: Generators, Yield, Async, Await AsynchLong Regression Analysis of Sparse Asynchronous Longitudinal Data ata Automated Test Assembly atable Create Tables for Reporting Clinical Trials ATAforecasting Automatic Time Series Analysis and Forecasting using the Ata Method atakrig Area-to-Area Kriging ATbounds Bounding Treatment Effects by Limited Information Pooling atime Asymptotic Timing atlas Stanford 'ATLAS' Search Engine API AtmChile Download Air Quality and Meteorological Information of Chile atmopt Analysis-of-Marginal-Tail-Means ATNr Run Allometric Trophic Networks Models atom4R Tools to Handle and Publish Metadata as 'Atom' XML Format atpolR ATPOL Grid Implementation ATR Alternative Tree Representation aTSA Alternative Time Series Analysis atsd Support Querying Axibase Time-Series Database attachment Deal with Dependencies attempt Tools for Defensive Programming attention Self-Attention Algorithm attenuation Correcting for Attenuation Due to Measurement Error attrib Attributable Burden of Disease AUC Threshold Independent Performance Measures for Probabilistic Classifiers auctestr Statistical Testing for AUC Data auctionr Estimate First-Price Auction Model audio Audio Interface for R audiometry Standard Conform Pure Tone Audiometry [PTA] Plots audit Bounds for Accounting Populations auditor Model Audit - Verification, Validation, and Error Analysis audrex Automatic Dynamic Regression using Extreme Gradient Boosting audubon Japanese Text Processing Tools augmentedRCBD Analysis of Augmented Randomised Complete Block Designs AugmenterR Data Augmentation for Machine Learning on Tabular Data augSIMEX Analysis of Data with Mixed Measurement Error and Misclassification in Covariates auk eBird Data Extraction and Processing in R aum Area Under Minimum of False Positives and Negatives AurieLSHGaussian Creates a Neighbourhood Using Locality Sensitive Hashing for Gaussian Projections auRoc Various Methods to Estimate the AUC ausplotsR TERN AusPlots Analysis Package AustralianPoliticians Provides Datasets About Australian Politicians AUtests Approximate Unconditional and Permutation Tests auth0 Secure Authentication in Shiny with Auth0 auto.pca Automatic Variable Reduction Using Principal Component Analysis autoBagging Learning to Rank Bagging Workflows with Metalearning autocart Autocorrelation Regression Trees autocogs Automatic Cognostic Summaries autoCovariateSelection Automated Covariate Selection Using HDPS Algorithm AutoDeskR An Interface to the 'AutoDesk' 'API' Platform autoencoder Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data autoFC Automatic Construction of Forced-Choice Tests autoFRK Automatic Fixed Rank Kriging autoharp Semi-Automatic Grading of R and Rmd Scripts autohrf Automated Generation of Data-Informed GLM Models in Task-Based fMRI Data Analysis autoimage Multiple Heat Maps for Projected Coordinates autokeras R Interface to 'AutoKeras' automagic Automagically Document and Install Packages Necessary to Run R Code automap Automatic Interpolation Package autoMFA Algorithms for Automatically Fitting MFA Models automl Deep Learning with Metaheuristic autoMrP Improving MrP with Ensemble Learning autonewsmd Auto-Generate Changelog using Conventional Commits AutoPipe Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis autoplotly Automatic Generation of Interactive Visualizations for Statistical Results Autoplotprotein Development of Visualization Tools for Protein Sequence autoRasch Semi-Automated Rasch Analysis autoReg Automatic Linear and Logistic Regression and Survival Analysis AutoregressionMDE Minimum Distance Estimation in Autoregressive Model AutoScore An Interpretable Machine Learning-Based Automatic Clinical Score Generator Autoseed Retrieve Disease-Related Genes from Public Sources autoshiny Automatic Transformation of an 'R' Function into a 'shiny' App autostats Auto Stats AutoStepwiseGLM Builds Stepwise GLMs via Train and Test Approach autostsm Automatic Structural Time Series Models autothresholdr An R Port of the 'ImageJ' Plugin 'Auto Threshold' autoTS Automatic Model Selection and Prediction for Univariate Time Series AutoWeatherIndices Calculating Weather Indices av Working with Audio and Video in R available Check if the Title of a Package is Available, Appropriate and Interesting avar Allan Variance averisk Calculation of Average Population Attributable Fractions and Confidence Intervals avfintools Financial Analysis Tools Using Data from 'Alpha Vantager' avidaR A Computational Biologist’s Toolkit To Get Data From 'avidaDB' AvInertia Calculate the Inertial Properties of a Flying Bird aVirtualTwins Adaptation of Virtual Twins Method from Jared Foster avocado Weekly Hass Avocado Sales Summary aweek Convert Dates to Arbitrary Week Definitions aweSOM Interactive Self-Organizing Maps AWR 'AWS' Java 'SDK' for R AWR.Athena 'AWS' Athena 'DBI' Wrapper AWR.Kinesis Amazon 'Kinesis' Consumer Application for Stream Processing AWR.KMS A Simple Client to the 'AWS' Key Management Service aws Adaptive Weights Smoothing aws.alexa Client for the Amazon Alexa Web Information Services API aws.comprehend Client for 'AWS Comprehend' aws.ec2metadata Get EC2 Instance Metadata aws.ecx Communicating with AWS EC2 and ECS using AWS REST APIs aws.iam AWS IAM Client Package aws.kms 'AWS Key Management Service' Client Package aws.lambda AWS Lambda Client Package aws.polly Client for AWS Polly aws.s3 'AWS S3' Client Package aws.signature Amazon Web Services Request Signatures aws.transcribe Client for 'AWS Transcribe' aws.translate Client for 'AWS Translate' awsMethods Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi' AZIAD Analyzing Zero-Inflated and Zero-Altered Data aziztest Novel Statistical Test for Aberration Enrichment AzureAppInsights Include Azure Application Insights in Shiny Apps AzureAuth Authentication Services for Azure Active Directory AzureCognitive Interface to Azure Cognitive Services AzureContainers Interface to 'Container Instances', 'Docker Registry' and 'Kubernetes' in 'Azure' AzureCosmosR Interface to the 'Azure Cosmos DB' 'NoSQL' Database Service AzureGraph Simple Interface to 'Microsoft Graph' AzureKeyVault Key and Secret Management in 'Azure' AzureKusto Interface to 'Kusto'/'Azure Data Explorer' azuremlsdk Interface to the 'Azure Machine Learning' 'SDK' AzureQstor Interface to 'Azure Queue Storage' AzureRMR Interface to 'Azure Resource Manager' AzureStor Storage Management in 'Azure' AzureTableStor Interface to the Table Storage Service in 'Azure' AzureVision Interface to Azure Computer Vision Services AzureVM Virtual Machines in 'Azure' AzureVMmetadata Interface to Azure Virtual Machine Instance Metadata babel Ribosome Profiling Data Analysis babelgene Gene Orthologs for Model Organisms in a Tidy Data Format babelmixr2 Use 'nlmixr2' to Interact with Open Source and Commercial Software babelwhale Talking to 'Docker' and 'Singularity' Containers babette Control 'BEAST2' babsim.hospital Bartz & Bartz Simulation Hospital babynames US Baby Names 1880-2017 babynamesIL Israel Baby Names 1948-2021 BacArena Modeling Framework for Cellular Communities in their Environments BACCO Bayesian Analysis of Computer Code Output [BACCO] BACCT Bayesian Augmented Control for Clinical Trials bacistool Bayesian Classification and Information Sharing [BaCIS] Tool for the Design of Multi-Group Phase II Clinical Trials backbone Extracts the Backbone from Graphs backpipe Backward Pipe [Right-to-Left] Operator backports Reimplementations of Functions Introduced Since R-3.0.0 backShift Learning Causal Cyclic Graphs from Unknown Shift Interventions backtest Exploring Portfolio-Based Conjectures About Financial Instruments bacondecomp Goodman-Bacon Decomposition BACprior Choice of Omega in the BAC Algorithm bacr Bayesian Adjustment for Confounding badger Badge for R Package baffle Make Waffle Plots with Base Graphics bagged.outliertrees Robust Explainable Outlier Detection Based on OutlierTree baggr Bayesian Aggregate Treatment Effects BAGofT A Binary Regression Adaptive Goodness-of-Fit Test [BAGofT] baguette Efficient Model Functions for Bagging bahc Filter Covariance and Correlation Matrices with Bootstrapped-Averaged Hierarchical Ansatz bain Bayes Factors for Informative Hypotheses bakeoff Data from "The Great British Bake Off" bakR Analyze and Compare Nucleotide Recoding RNA Sequencing Datasets BalanceCheck Balance Check for Multiple Covariates in Matched Observational Studies BalancedSampling Balanced and Spatially Balanced Sampling BALCONY Better ALignment CONsensus analYsis Ball Statistical Inference and Sure Independence Screening via Ball Statistics BALLI Expression RNA-Seq Data Analysis Based on Linear Mixed Model BallMapper The Ball Mapper Algorithm BaM Functions and Datasets for "Bayesian Methods: A Social and Behavioral Sciences Approach" bama High Dimensional Bayesian Mediation Analysis BAMBI Bivariate Angular Mixture Models bamboo Protein Secondary Structure Prediction Using the Bamboo Method bambooHR A Wrapper to the 'BambooHR' API bamdit Bayesian Meta-Analysis of Diagnostic Test Data bamlss Bayesian Additive Models for Location, Scale, and Shape [and Beyond] BAMMtools Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees bamp Bayesian Age-Period-Cohort Modeling and Prediction bandit Functions for Simple a/B Split Test and Multi-Armed Bandit Analysis bang Bayesian Analysis, No Gibbs bangladesh Provides Ready to Use Shapefiles for Geographical Map of Bangladesh bannerCommenter Make Banner Comments with a Consistent Format BANOVA Hierarchical Bayesian ANOVA Models banter BioAcoustic eveNT classifiER banxicoR Download Data from the Bank of Mexico bapred Batch Effect Removal and Addon Normalization [in Phenotype Prediction using Gene Data] BaPreStoPro Bayesian Prediction of Stochastic Processes BAR Bayesian Adaptive Randomization BarBorGradient Function Minimum Approximator barcode Render Barcode Distribution Plots baRcodeR Label Creation for Tracking and Collecting Data from Biological Samples BarcodingR Species Identification using DNA Barcodes bardr Complete Works of William Shakespeare in Tidy Format BARIS Access and Import Data from the French Open Data Portal Barnard Barnard's Unconditional Test barplot3d Create 3D Barplots BART Bayesian Additive Regression Trees bartBMA Bayesian Additive Regression Trees using Bayesian Model Averaging bartCause Causal Inference using Bayesian Additive Regression Trees bartcs Bayesian Additive Regression Trees for Confounder Selection bartMachine Bayesian Additive Regression Trees bartMachineJARs bartMachine JARs BartMixVs Variable Selection Using Bayesian Additive Regression Trees baRulho Quantifying Habitat-Induced Acoustic Signal Degradation Barycenter Regularized Wasserstein Distances and Barycenters BAS Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling basad Bayesian Variable Selection with Shrinking and Diffusing Priors base.rms Convert Regression Between Base Function and 'rms' Package base64 Base64 Encoder and Decoder base64enc Tools for base64 encoding base64url Fast and URL-Safe Base64 Encoder and Decoder baseballDBR Sabermetrics and Advanced Baseball Statistics baseballr Acquiring and Analyzing Baseball Data basecamb Utilities for Streamlined Data Import, Imputation and Modelling basedosdados 'Base Dos Dados' R Client basefun Infrastructure for Computing with Basis Functions baseline Baseline Correction of Spectra basemaps Accessing Spatial Basemaps in R BaseSet Working with Sets the Tidy Way basetheme Themes for Base Graphics Plots basf Plot Simple Features with 'base' Sensibilities basicMCMCplots Trace Plots, Density Plots and Chain Comparisons for MCMC Samples basicspace Recovering a Basic Space from Issue Scales basictabler Construct Rich Tables for Output to 'HTML'/'Excel' basifoR Retrieval and Processing of the Spanish National Forest Inventory BASiNET Classification of RNA Sequences using Complex Network Theory BASiNETEntropy Classification of RNA Sequences using Complex Network and Information Theory BaSkePro Bayesian Model to Archaeological Faunal Skeletal Profiles basket Basket Trial Analysis BasketballAnalyzeR Analysis and Visualization of Basketball Data baskexact Exact Calculation of Basket Trial Operating Characteristics BASS Bayesian Adaptive Spline Surfaces BaSTA Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data bastah Big Data Statistical Analysis for High-Dimensional Models BAT Biodiversity Assessment Tools batata Managing Packages Removal and Installation batch Batching Routines in Parallel and Passing Command-Line Arguments to R BatchExperiments Statistical Experiments on Batch Computing Clusters BatchGetSymbols Downloads and Organizes Financial Data for Multiple Tickers BatchJobs Batch Computing with R batchmeans Consistent Batch Means Estimation of Monte Carlo Standard Errors batchmix Semi-Supervised Bayesian Mixture Models Incorporating Batch Correction batchscr Batch Script Helpers batchtma Batch Effect Adjustments batchtools Tools for Computation on Batch Systems bate Computes Bias-Adjusted Treatment Effect batman Convert Categorical Representations of Logicals to Actual Logicals batteryreduction An R Package for Data Reduction by Battery Reduction BAwiR Analysis of Basketball Data baycn Bayesian Inference for Causal Networks bayefdr Bayesian Estimation and Optimisation of Expected False Discovery Rate bayes4psy User Friendly Bayesian Data Analysis for Psychology bayesAB Fast Bayesian Methods for AB Testing bayesammi Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model bayesanova Bayesian Inference in the Analysis of Variance via Markov Chain Monte Carlo in Gaussian Mixture Models BayesARIMAX Bayesian Estimation of ARIMAX Model bayesassurance Bayesian Assurance Computation BayesBinMix Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions bayesbio Miscellaneous Functions for Bioinformatics and Bayesian Statistics bayesboot An Implementation of Rubin's [1981] Bayesian Bootstrap BayesBP Bayesian Estimation using Bernstein Polynomial Fits Rate Matrix bayesbr Beta Regression on a Bayesian Model BayesCACE Bayesian Model for CACE Analysis BayesCombo Bayesian Evidence Combination BayesComm Bayesian Community Ecology Analysis bayescopulareg Bayesian Copula Regression bayescount Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC BayesCR Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions bayesCT Simulation and Analysis of Adaptive Bayesian Clinical Trials BayesCTDesign Two Arm Bayesian Clinical Trial Design with and Without Historical Control Data BayesDA Functions and Datasets for the book "Bayesian Data Analysis" bayesDccGarch Methods and Tools for Bayesian Dynamic Conditional Correlation GARCH[1,1] Model BayesDesign Bayesian Single-Arm Design with Survival Endpoints bayesdfa Bayesian Dynamic Factor Analysis [DFA] with 'Stan' BayesDissolution Bayesian Models for Dissolution Testing bayesdistreg Bayesian Distribution Regression bayesDP Implementation of the Bayesian Discount Prior Approach for Clinical Trials BayesESS Determining Effective Sample Size BayesFactor Computation of Bayes Factors for Common Designs BayesFM Bayesian Inference for Factor Modeling bayesforecast Bayesian Time Series Modeling with Stan bayesGAM Fit Multivariate Response Generalized Additive Models using Hamiltonian Monte Carlo bayesGARCH Bayesian Estimation of the GARCH[1,1] Model with Student-t Innovations BayesGOF Bayesian Modeling via Frequentist Goodness-of-Fit BayesGPfit Fast Bayesian Gaussian Process Regression Fitting BayesGWQS Bayesian Grouped Weighted Quantile Sum Regression bayesian Bindings for Bayesian TidyModels bayesianETAS Bayesian Estimation of the ETAS Model for Earthquake Occurrences Bayesiangammareg Bayesian Gamma Regression: Joint Mean and Shape Modeling BayesianGLasso Bayesian Graphical Lasso BayesianLaterality Predict Brain Asymmetry Based on Handedness and Dichotic Listening BayesianMediationA Bayesian Mediation Analysis BayesianNetwork Bayesian Network Modeling and Analysis BayesianPower Sample Size and Power for Comparing Inequality Constrained Hypotheses BayesianReasoning Plot Positive and Negative Predictive Values for Medical Tests Bayesiantreg Bayesian t Regression for Modeling Mean and Scale Parameters bayesImageS Bayesian Methods for Image Segmentation using a Potts Model BayesLCA Bayesian Latent Class Analysis bayesLife Bayesian Projection of Life Expectancy bayeslincom Linear Combinations of Bayesian Posterior Samples bayeslm Efficient Sampling for Gaussian Linear Regression with Arbitrary Priors BayesLN Bayesian Inference for Log-Normal Data BayesLogit PolyaGamma Sampling bayesloglin Bayesian Analysis of Contingency Table Data bayeslongitudinal Adjust Longitudinal Regression Models Using Bayesian Methodology bayesm Bayesian Inference for Marketing/Micro-Econometrics BayesMallows Bayesian Preference Learning with the Mallows Rank Model BayesMassBal Bayesian Data Reconciliation of Separation Processes bayesmeta Bayesian Random-Effects Meta-Analysis and Meta-Regression BayesMFSurv Bayesian Misclassified-Failure Survival Model bayesmix Bayesian Mixture Models with JAGS BayesMixSurv Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification bayesmove Non-Parametric Bayesian Analyses of Animal Movement BayesMRA Bayesian Multi-Resolution Gaussian Process Approximations BayesMultiMode Testing and Detecting Multimodality using Bayesian Methods BayesMultMeta Bayesian Multivariate Meta-Analysis bayesnec A Bayesian No-Effect- Concentration [NEC] Algorithm BayesNetBP Bayesian Network Belief Propagation BayesNSGP Bayesian Analysis of Non-Stationary Gaussian Process Models BayesPieceHazSelect Variable Selection in a Hierarchical Bayesian Model for a Hazard Function BayesPiecewiseICAR Hierarchical Bayesian Model for a Hazard Function bayesplay The Bayes Factor Playground bayesplot Plotting for Bayesian Models bayesPO Bayesian Inference for Presence-Only Data bayesPop Probabilistic Population Projection BayesPostEst Generate Postestimation Quantities for Bayesian MCMC Estimation BayesPPD Bayesian Power Prior Design BayesProject Fast Projection Direction for Multivariate Changepoint Detection bayesQR Bayesian Quantile Regression bayesreg Bayesian Regression Models with Global-Local Shrinkage Priors Bayesrel Bayesian Reliability Estimation BayesReversePLLH Fits the Bayesian Piecewise Linear Log-Hazard Model BayesRGMM Bayesian Robust Generalized Mixed Models for Longitudinal Data BayesRS Bayes Factors for Hierarchical Linear Models with Continuous Predictors bayesrules Datasets and Supplemental Functions from Bayes Rules! Book bayess Bayesian Essentials with R BayesS5 Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening [S5] BayesSAE Bayesian Analysis of Small Area Estimation BayesSampling Bayes Linear Estimators for Finite Population BayesSenMC Different Models of Posterior Distributions of Adjusted Odds Ratio BayesSpec Bayesian Spectral Analysis Techniques BayesSPsurv Bayesian Spatial Split Population Survival Model BayesSUR Bayesian Seemingly Unrelated Regression bayesSurv Bayesian Survival Regression with Flexible Error and Random Effects Distributions BayesSurvival Bayesian Survival Analysis for Right Censored Data bayest Effect Size Targeted Bayesian Two-Sample t-Tests via Markov Chain Monte Carlo in Gaussian Mixture Models bayestestR Understand and Describe Bayesian Models and Posterior Distributions bayesTFR Bayesian Fertility Projection BayesTools Tools for Bayesian Analyses BayesTree Bayesian Additive Regression Trees BayesTreePrior Bayesian Tree Prior Simulation BayesTwin Bayesian Analysis of Item-Level Twin Data BayesVarSel Bayes Factors, Model Choice and Variable Selection in Linear Models bayesvl Visually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan' BayesX R Utilities Accompanying the Software Package BayesX BayesXsrc R Package Distribution of the BayesX C++ Sources bayesZIB Bayesian Zero-Inflated Bernoulli Regression Model bayfoxr Global Bayesian Foraminifera Core Top Calibration BayLum Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating bayMDS Bayesian Multidimensional Scaling and Choice of Dimension baymedr Computation of Bayes Factors for Common Biomedical Designs baystability Bayesian Stability Analysis of Genotype by Environment Interaction [GEI] BAYSTAR On Bayesian Analysis of Threshold Autoregressive Models baytrends Long Term Water Quality Trend Analysis bazar Miscellaneous Basic Functions BB Solving and Optimizing Large-Scale Nonlinear Systems BBcor Bayesian Bootstrapping Correlations bbdetection Identification of Bull and Bear States of the Market BBEST Bayesian Estimation of Incoherent Neutron Scattering Backgrounds BBI Benthic Biotic Indices Calculation from Composition Data bbknnR Perform Batch Balanced KNN in R bbl Boltzmann Bayes Learner BBmisc Miscellaneous Helper Functions for B. Bischl bbmle Tools for General Maximum Likelihood Estimation bbotk Black-Box Optimization Toolkit bbreg Bessel and Beta Regressions via Expectation-Maximization Algorithm for Continuous Bounded Data bbricks Bayesian Methods and Graphical Model Structures for Statistical Modeling bbsBayes Hierarchical Bayesian Analysis of North American BBS Data BBSSL Bayesian Bootstrap Spike-and-Slab LASSO bbw Blocked Weighted Bootstrap bc3net Gene Regulatory Network Inference with Bc3net BCA1SG Block Coordinate Ascent with One-Step Generalized Rosen Algorithm bcaboot Bias Corrected Bootstrap Confidence Intervals BCBCSF Bias-Corrected Bayesian Classification with Selected Features BCC1997 Calculation of Option Prices Based on a Universal Solution bccp Bias Correction under Censoring Plan BCDAG Bayesian Structure and Causal Learning of Gaussian Directed Graphs bcdata Search and Retrieve Data from the BC Data Catalogue BCDating Business Cycle Dating and Plotting Tools BcDiag Diagnostics Plots for Bicluster Data BCE Bayesian Composition Estimator: Estimating Sample [Taxonomic] Composition from Biomarker Data BCEA Bayesian Cost Effectiveness Analysis BCEE The Bayesian Causal Effect Estimation Algorithm bcf Causal Inference for a Binary Treatment and Continuous Outcome using Bayesian Causal Forests bcfrailph Semiparametric Bivariate Correlated Frailty Model bcfrailphdv Bivariate Correlated Frailty Models with Varied Variances bcgam Bayesian Constrained Generalised Linear Models BCgee Bias-Corrected Estimates for Generalized Linear Models for Dependent Data BCHM Clinical Trial Calculation Based on BCHM Design Bchron Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling BClustLonG A Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data bcmaps Map Layers and Spatial Utilities for British Columbia bcmixed Mixed Effect Model with the Box-Cox Transformation bcp Bayesian Analysis of Change Point Problems bcpa Behavioral Change Point Analysis of Animal Movement bcputility Wrapper for SQL Server bcp Utility BCRA Breast Cancer Risk Assessment bcrm Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials bcROCsurface Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests bcrypt 'Blowfish' Password Hashing Algorithm BCSub A Bayesian Semiparametric Factor Analysis Model for Subtype Identification [Clustering] BCT Bayesian Context Trees for Discrete Time Series bcTSNE Projected t-SNE for Batch Correction bda Binned Data Analysis bdc Biodiversity Data Cleaning bdchecks Biodiversity Data Checks bdclean A User-Friendly Biodiversity Data Cleaning App for the Inexperienced R User bdDwC Darwinizer: Darwin Core [DwC] Field Names Standardization bde Bounded Density Estimation BDEsize Efficient Determination of Sample Size in Balanced Design of Experiments BDgraph Bayesian Structure Learning in Graphical Models using Birth-Death MCMC bdl Interface and Tools for 'BDL' API bdlp Transparent and Reproducible Artificial Data Generation bdots Bootstrapped Differences of Time Series BDP2 Bayesian Adaptive Designs for Phase II Trials with Binary Endpoint bdpar Big Data Preprocessing Architecture bdpopt Optimisation of Bayesian Decision Problems bdpv Inference and Design for Predictive Values in Diagnostic Tests bdrc Bayesian Discharge Rating Curves bdribs Bayesian Detection of Potential Risk Using Inference on Blinded Safety Data bdscale Remove Weekends and Holidays from ggplot2 Axes bdsmatrix Routines for Block Diagonal Symmetric Matrices bdvis Biodiversity Data Visualizations BDWreg Bayesian Inference for Discrete Weibull Regression BE Bioequivalence Study Data Analysis bea.R Bureau of Economic Analysis API BEACH Biometric Exploratory Analysis Creation House beadplexr Analysis of Multiplex Cytometric Bead Assays beakr A Minimalist Web Framework for R beam Fast Bayesian Inference in Large Gaussian Graphical Models beanplot Visualization via Beanplots [Like Boxplot/Stripchart/Violin Plot] beans Data on Dried Beans beanz Bayesian Analysis of Heterogeneous Treatment Effect bearishTrader Trading Strategies for Bearish Outlook beast Bayesian Estimation of Change-Points in the Slope of Multivariate Time-Series beastier Call 'BEAST2' BeastJar JAR Dependency for MCMC Using 'BEAST' beautier 'BEAUti' from R BED Biological Entity Dictionary [BED] BEDASSLE Quantifies Effects of Geo/Eco Distance on Genetic Differentiation BEDMatrix Extract Genotypes from a PLINK .bed File bedr Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix' BeeGUTS General Unified Threshold Model of Survival for Bees using Bayesian Inference beepr Easily Play Notification Sounds on any Platform beeswarm The Bee Swarm Plot, an Alternative to Stripchart beezdemand Behavioral Economic Easy Demand befproj Makes a Local Population Projection beginr Functions for R Beginners behaviorchange Tools for Behavior Change Researchers and Professionals behavr Canonical Data Structure for Behavioural Data BEKKs Multivariate Conditional Volatility Modelling and Forecasting belex Download Historical Data from the Belgrade Stock Exchange belg Boltzmann Entropy of a Landscape Gradient bellreg Count Regression Models Based on the Bell Distribution bench High Precision Timing of R Expressions Benchmarking Benchmark and Frontier Analysis Using DEA and SFA benchmarkme Crowd Sourced System Benchmarks benchmarkmeData Data Set for the 'benchmarkme' Package benchr High Precise Measurement of R Expressions Execution Time bender Bender Client benford Benford's Analysis on Large Data Sets benford.analysis Benford Analysis for Data Validation and Forensic Analytics BenfordTests Statistical Tests for Evaluating Conformity to Benford's Law BENMMI Benthic Multi-Metric Index bentcableAR Bent-Cable Regression for Independent Data or Autoregressive Time Series benthos Marine Benthic Ecosystem Analysis Bergm Bayesian Exponential Random Graph Models berryFunctions Function Collection Related to Plotting and Hydrology BeSS Best Subset Selection in Linear, Logistic and CoxPH Models Bessel Computations and Approximations for Bessel Functions BEST Bayesian Estimation Supersedes the t-Test bestglm Best Subset GLM and Regression Utilities besthr Generating Bootstrap Estimation Distributions of HR Data Bestie Bayesian Estimation of Intervention Effects bestNormalize Normalizing Transformation Functions BESTree Branch-Exclusive Splits Trees bestridge A Comprehensive R Package for Best Subset Selection bestSDP Burden Estimate of Common Communicable Diseases in Settlements of Displaced Populations BET Binary Expansion Testing betaBayes Bayesian Beta Regression BetaBit Mini Games from Adventures of Beta and Bit betacal Beta Calibration betafunctions Functions for Working with Two- And Four-Parameter Beta Probability Distributions betapart Partitioning Beta Diversity into Turnover and Nestedness Components BetaPASS Calculate Power and Sample Size with Beta Regression betaper Taxonomic Uncertainty on Multivariate Analyses of Ecological Data betareg Beta Regression betaSandwich Robust Confidence Intervals for Standardized Regression Coefficients betategarch Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models bethel Bethel's algorithm BETS Brazilian Economic Time Series bets.covid19 The BETS Model for Early Epidemic Data bettermc Enhanced Fork-Based Parallelization BetterReg Better Statistics for OLS and Binomial Logistic Regression BeviMed Bayesian Evaluation of Variant Involvement in Mendelian Disease BeyondBenford Compare the Goodness of Fit of Benford's and Blondeau Da Silva's Digit Distributions to a Given Dataset beyondWhittle Bayesian Spectral Inference for Stationary Time Series bezier Toolkit for Bezier Curves and Splines bfast Breaks for Additive Season and Trend BFF Bayes Factor Functions bfp Bayesian Fractional Polynomials BFpack Flexible Bayes Factor Testing of Scientific Expectations BFS Get Data from the Swiss Statistical Office bfsl Best-Fit Straight Line bfsMaps Plot Maps from Switzerland by Swiss Federal Statistical Office bfw Bayesian Framework for Computational Modeling BGData A Suite of Packages for Analysis of Big Genomic Data bgeva Binary Generalized Extreme Value Additive Models bggAnalytics BoardGameGeek's Board Game Data Analysis Tools BGGE Bayesian Genomic Linear Models Applied to GE Genome Selection BGGM Bayesian Gaussian Graphical Models bggum Bayesian Estimation of Generalized Graded Unfolding Model Parameters BGLR Bayesian Generalized Linear Regression bgmfiles Example BGM Files for the Atlantis Ecosystem Model BGmisc Behavior Genetic Modeling Functions bgmm Gaussian Mixture Modeling Algorithms and the Belief-Based Mixture Modeling bgsmtr Bayesian Group Sparse Multi-Task Regression bgumbel Bimodal Gumbel Distribution BGVAR Bayesian Global Vector Autoregressions BH Boost C++ Header Files BHAI Estimate the Burden of Healthcare-Associated Infections Bhat General Likelihood Exploration BHH2 Useful Functions for Box, Hunter and Hunter II bhm Biomarker Threshold Models bhmbasket Bayesian Hierarchical Models for Basket Trials BHMSMAfMRI Bayesian Hierarchical Multi-Subject Multiscale Analysis of Functional MRI [fMRI] Data bhpm Bayesian Hierarchical Poisson Models for Multiple Grouped Outcomes with Clustering BHSBVAR Structural Bayesian Vector Autoregression Models BHTSpack Bayesian Multi-Plate High-Throughput Screening of Compounds BI Blinding Assessment Indexes for Randomized, Controlled, Clinical Trials BiasCorrector A GUI to Correct Measurement Bias in DNA Methylation Analyses BiasedUrn Biased Urn Model Distributions bib2df Parse a BibTeX File to a Data Frame BiBitR R Wrapper for Java Implementation of BiBit biblio Interacting with BibTeX Databases bibliometrix Comprehensive Science Mapping Analysis bibliometrixData Bibliometrix Example Datasets biblionetwork Create Different Types of Bibliometric Networks BibPlots Plot Functions for Use 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'big.matrix' Objects from Package 'bigmemory' bigassertr Assertion and Message Functions bigchess Read, Write, Manipulate, Explore Chess PGN Files and R API to UCI Chess Engines bigD Flexibly Format Dates and Times to a Given Locale bigdatadist Distances for Machine Learning and Statistics in the Context of Big Data BIGDAWG Case-Control Analysis of Multi-Allelic Loci bigdist Store Distance Matrices on Disk bigDM Scalable Bayesian Disease Mapping Models for High-Dimensional Data bigGP Distributed Gaussian Process Calculations BIGL Biochemically Intuitive Generalized Loewe Model biglasso Extending Lasso Model Fitting to Big Data bigleaf Physical and Physiological Ecosystem Properties from Eddy Covariance Data biglm Bounded Memory Linear and Generalized Linear Models biglmm Bounded Memory Linear and Generalized Linear Models bigMap Big Data Mapping bigmatch Making Optimal Matching Size-Scalable Using Optimal Calipers bigmds Multidimensional Scaling for Big Data bigmemory Manage Massive Matrices with Shared Memory and Memory-Mapped Files bigmemory.sri A Shared Resource Interface for Bigmemory Project Packages bignum Arbitrary-Precision Integer and Floating-Point Mathematics bigparallelr Easy Parallel Tools bigQF Quadratic Forms in Large Matrices bigQueryR Interface with Google BigQuery with Shiny Compatibility BigQuic Big Quadratic Inverse Covariance Estimation bigreadr Read Large Text Files bigReg Generalized Linear Models [GLM] for Large Data Sets bigrquery An Interface to Google's 'BigQuery' 'API' bigsimr Fast Generation of High-Dimensional Random Vectors bigsnpr Analysis of Massive SNP Arrays bigsparser Sparse Matrix Format with Data on Disk bigsplines Smoothing Splines for Large Samples bigstatsr Statistical Tools for Filebacked Big Matrices bigstep Stepwise Selection for Large Data Sets bigSurvSGD Big Survival Analysis Using Stochastic Gradient Descent bigtabulate Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects bigtcr Nonparametric Analysis of Bivariate Gap Time with Competing Risks bigtime Sparse Estimation of Large Time Series Models bigutilsr Utility Functions for Large-scale Data BigVAR Dimension Reduction Methods for Multivariate Time Series bikeshare14 Bay Area Bike Share Trips in 2014 bikm1 Co-Clustering Adjusted Rand Index and Bikm1 Procedure for Contingency and Binary Data-Sets bild A Package for BInary Longitudinal Data billboard Contains Data of Billboard Hot 100 Songs billboarder Create Interactive Chart with the JavaScript 'Billboard' Library bimets Time Series and Econometric Modeling BimodalIndex The Bimodality Index binancer API Client to 'Binance' Binarize Binarization of One-Dimensional Data BinarybalancedCut Threshold Cut Point of Probability for a Binary Classifier Model BinaryDosage Creates, Merges, and Reads Binary Dosage Files BinaryEMVS Variable Selection for Binary Data Using the EM Algorithm BinaryEPPM Mean and Variance Modeling of Binary Data binaryGP Fit and Predict a Gaussian Process Model with [Time-Series] Binary Response binaryMM Flexible Marginalized Models for Binary Correlated Outcomes binaryTimeSeries Analyzes a Binary Variable During a Time Series binb 'binb' is not 'Beamer' BINCOR Estimate the Correlation Between Two Irregular Time Series binda Multi-Class Discriminant Analysis using Binary Predictors bindata Generation of Artificial Binary Data bindr Parametrized Active Bindings bindrcpp An 'Rcpp' Interface to Active Bindings binequality Methods for Analyzing Binned Income Data binford Binford's Hunter-Gatherer Data binfunest Estimates Parameters of Functions Driving Binomial Random Variables bingadsR Get Bing Ads Data via the 'Windsor.ai' API bingat Binary Graph Analysis Tools binGroup Evaluation and Experimental Design for Binomial Group Testing binGroup2 Identification and Estimation using Group Testing BinGSD Calculation for Single Arm Group Sequential Test with Binary Endpoint binhf Haar-Fisz Functions for Binomial Data binman A Binary Download Manager BinMat Processes Binary Data Obtained from Fragment Analysis [Such as AFLPs, ISSRs, and RFLPs] binMto Many-to-One Comparisons of Proportions BinNonNor Data Generation with Binary and Continuous Non-Normal Components BinNor Simultaneous Generation of Multivariate Binary and Normal Variates binom Binomial Confidence Intervals for Several Parameterizations binomialRF Binomial Random Forest Feature Selection binomSamSize Confidence Intervals and Sample Size Determination for a Binomial Proportion under Simple Random Sampling and Pooled Sampling BinOrdNonNor Concurrent Generation of Binary, Ordinal and Continuous Data binovisualfields Depth-Dependent Binocular Visual Fields Simulation binr Cut Numeric Values into Evenly Distributed Groups BinSegBstrap Piecewise Smooth Regression by Bootstrapped Binary Segmentation binsegRcpp Efficient Implementation of Binary Segmentation binseqtest Exact Binary Sequential Designs and Analysis binsmooth Generate PDFs and CDFs from Binned Data binspp Bayesian Inference for Neyman-Scott Point Processes binsreg Binscatter Estimation and Inference binst Data Preprocessing, Binning for Classification and Regression BINtools Bayesian BIN [Bias, Information, Noise] Model of Forecasting bio.infer Predict Environmental Conditions from Biological Observations bio3d Biological Structure Analysis bioacoustics Analyse Audio Recordings and Automatically Extract Animal Vocalizations bioassays Summarising Multi Well Plate Cellular Assay bioC.logs BioConductor Package Downloads Stats BioCircos Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js' bioclim Bioclimatic Analysis and Classification BiocManager Access the Bioconductor Project Package Repository Biocomb Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis biocompute Create and Manipulate BioCompute Objects Biodem Biodemography Functions BiodiversityR Package for Community Ecology and Suitability Analysis biodosetools An R Shiny Application for Biological Dosimetry BIOdry Multilevel Modeling of Dendroclimatical Fluctuations BioFTF Biodiversity Assessment Using Functional Tools biogas Process Biogas Data and Predict Biogas Production biogeo Point Data Quality Assessment and Coordinate Conversion biogeom Biological Geometries biogram N-Gram Analysis of Biological Sequences biogrowth Modelling of Population Growth Bioi Biological Image Analysis bioimagetools Tools for Microscopy Imaging bioinactivation Mathematical Modelling of [Dynamic] Microbial Inactivation BioInsight Filter and Plot RNA Biotypes biokNN Bi-Objective k-Nearest Neighbors Imputation for Multilevel Data biolink Create Hyperlinks to Biological Databases and Resources Biolinv Modelling and Forecasting Biological Invasions BioMark Find Biomarkers in Two-Class Discrimination Problems biomartr Genomic Data Retrieval BIOMASS Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests biometryassist Functions to Assist Design and Analysis of Agronomic Experiments biomod2 Ensemble Platform for Species Distribution Modeling bionetdata Biological and Chemical Data Networks bioOED Sensitivity Analysis and Optimum Experiment Design for Microbial Inactivation Biopeak Identification of Impulse-Like Gene Expression Changes in Short Genomic Series Data BioPET Biomarker Prognostic Enrichment Tool BioPETsurv Biomarker Prognostic Enrichment Tool for Time-to-Event Trial bioPN Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets BioProbability Probability in Biostatistics bioRad Biological Analysis and Visualization of Weather Radar Data BioRssay Analyze Bioassays and Probit Graphs Bios2cor From Biological Sequences and Simulations to Correlation Analysis bios2mds From Biological Sequences to Multidimensional Scaling biosensors.usc Distributional Data Analysis Techniques for Biosensor Data bioseq A Toolbox for Manipulating Biological Sequences biosignalEMG Tools for Electromyogram Signals [EMG] Analysis biospear Biomarker Selection in Penalized Regression Models biostat3 Utility Functions, Datasets and Extended Examples for Survival Analysis Biostatistics Statistics Tutorials for Biologists BioStatR Initiation à La Statistique Avec R biosurvey Tools for Biological Survey Planning biotic Calculation of Freshwater Biotic Indices biotools Tools for Biometry and Applied Statistics in Agricultural Science BioVenn Create Area-Proportional Venn Diagrams from Biological Lists bipartite Visualising Bipartite Networks and Calculating Some [Ecological] Indices bipartiteD3 Interactive Bipartite Graphs BipartiteModularityMaximization Partition Bipartite Network into Non-Overlapping Biclusters by Optimizing Bipartite Modularity bipd Bayesian Individual Patient Data Meta-Analysis using 'JAGS' biplotbootGUI Bootstrap on Classical Biplots and Clustering Disjoint Biplot BiplotGUI Interactive Biplots in R BiplotML Biplots Estimation with Algorithms ML BiProbitPartial Bivariate Probit with Partial Observability birankr Ranking Nodes in Bipartite and Weighted Networks birdring Methods to Analyse Ring Re-Encounter Data birk MA Birk's Functions birtr The R Package for "The Basics of Item Response Theory Using R" biscale Tools and Palettes for Bivariate Thematic Mapping BISdata Download Data from the Bank for International Settlements [BIS] bisectr Tools to find bad commits with git bisect BiSEp Toolkit to Identify Candidate Synthetic Lethality bisque Approximate Bayesian Inference via Sparse Grid Quadrature Evaluation [BISQuE] for Hierarchical Models BisqueRNA Decomposition of Bulk Expression with Single-Cell Sequencing BisRNA Analysis of RNA Cytosine-5 Methylation bistablehistory Cumulative History Analysis for Bistable Perception Time Series bit Classes and Methods for Fast Memory-Efficient Boolean Selections bit64 A S3 Class for Vectors of 64bit Integers bite Bayesian Integrative Models of Trait Evolution bitmexr R Client for BitMEX bitops Bitwise Operations BiTrinA Binarization and Trinarization of One-Dimensional Data bitsqueezr Quantize Floating-Point Numbers for Improved Compressibility bittermelon Monochrome Bitmap Font Tools Bivariate.Pareto Bivariate Pareto Models bivariatemaps Creates Bivariate Maps BivGeo Basu-Dhar Bivariate Geometric Distribution bivgeom Roy's Bivariate Geometric Distribution BivRec Bivariate Alternating Recurrent Event Data Analysis BivRegBLS Tolerance Interval and EIV Regression - Method Comparison Studies bivrp Bivariate Residual Plots with Simulation Polygons BivUnifBin Generation of Bivariate Uniform Data and Its Relation to Bivariate Binary Data biwavelet Conduct Univariate and Bivariate Wavelet Analyses biwt Compute the Biweight Mean Vector and Covariance & Correlation Matrice bizdays Business Days Calculations and Utilities bizicount Bivariate Zero-Inflated Count Models Using Copulas bjscrapeR An API Wrapper for the Bureau of Justice Statistics [BJS] bkmr Bayesian Kernel Machine Regression bkmrhat Parallel Chain Tools for Bayesian Kernel Machine Regression blackbox Black Box Optimization and Exploration of Parameter Space BlackCarbon Processing Raw Black Carbon Concentration blaise Read and Write FWF Files in the 'Blaise' Format BlakerCI Blaker's Binomial and Poisson Confidence Limits BlandAltmanLeh Plots [Slightly Extended] Bland-Altman Plots blandr Bland-Altman Method Comparison BlanketStatsments Build and Compare Statistical Models blapsr Bayesian Inference with Laplace Approximations and P-Splines blastula Easily Send HTML Email Messages blatent Bayesian Latent Variable Models blatr Send Emails Using 'Blat' for Windows Blaunet Calculate and Analyze Blau Statuses for Measuring Social Distance blavaan Bayesian Latent Variable Analysis BLCOP Black-Litterman and Copula Opinion Pooling Frameworks blendedLink A New Link Function that Blends Two Specified Link Functions blender Analyze biotic homogenization of landscapes Blendstat Joint Analysis of Experiments with Mixtures and Random Effects blink Record Linkage for Empirically Motivated Priors bliss Bayesian Functional Linear Regression with Sparse Step Functions blm Binomial Linear Regression blme Bayesian Linear Mixed-Effects Models blmeco Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan" BLModel Black-Litterman Posterior Distribution blob A Simple S3 Class for Representing Vectors of Binary Data ['BLOBS'] BlockCov Estimation of Large Block Covariance Matrices blockCV Spatial and Environmental Blocking for K-Fold Cross-Validation blockForest Block Forests: Random Forests for Blocks of Clinical and Omics Covariate Data blocklength Select an Optimal Block-Length to Bootstrap Dependent Data [Block Bootstrap] blockmatrix blockmatrix: Tools to solve algebraic systems with partitioned matrices blockmodeling Generalized and Classical Blockmodeling of Valued Networks BlockmodelingGUI GUI for the Generalised Blockmodeling of Valued Networks blockmodels Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm blockrand Randomization for Block Random Clinical Trials blocksdesign Nested and Crossed Block Designs for Factorial and Unstructured Treatment Sets blogdown Create Blogs and Websites with R Markdown BLOQ Impute and Analyze Data with BLOQ Observations blorr Tools for Developing Binary Logistic Regression Models BLPestimatoR Performs a BLP Demand Estimation BLR Bayesian Linear Regression blrm Dose Escalation Design in Phase I Oncology Trial Using Bayesian Logistic Regression Modeling BLRPM Stochastic Rainfall Generator Bartlett-Lewis Rectangular Pulse Model BLRShiny Interactive Document for Working with Binary Logistic Regression Analysis BLRShiny2 Interactive Document for Working with Binary Logistic Regression Analysis blscrapeR An API Wrapper for the Bureau of Labor Statistics [BLS] BLSM Bayesian Latent Space Model blsR Make Requests from the Bureau of Labor Statistics API bltm Bayesian Latent Threshold Modeling bluebike Blue Bike Comprehensive Data BlythStillCasellaCI Blyth-Still-Casella Exact Binomial Confidence Intervals BMA Bayesian Model Averaging bmabasket Bayesian Model Averaging for Basket Trials BMAmevt Multivariate Extremes: Bayesian Estimation of the Spectral Measure bmass Bayesian Multivariate Analysis of Summary Statistics bmem Mediation Analysis with Missing Data Using Bootstrap bmemLavaan Mediation Analysis with Missing Data and Non-Normal Data bmgarch Bayesian Multivariate GARCH Models bmggum Bayesian Multidimensional Generalized Graded Unfolding Model BMisc Miscellaneous Functions for Panel Data, Quantiles, and Printing Results bmixture Bayesian Estimation for Finite Mixture of Distributions bmlm Bayesian Multilevel Mediation bmotif Motif Analyses of Bipartite Networks bmp Read Windows Bitmap [BMP] Images BMRBr 'BMRB' File Downloader bmrm Bundle Methods for Regularized Risk Minimization Package BMRMM An Implementation of the Bayesian Markov [Renewal] Mixed Models BMRSr Wrapper Functions to the 'BMRS API' BMRV Bayesian Models for Rare Variant Association Analysis BMS Bayesian Model Averaging Library bmscstan Bayesian Multilevel Single Case Models using 'Stan' bmstdr Bayesian Modeling of Spatio-Temporal Data with R BMT The BMT Distribution BMTAR Bayesian Approach for MTAR Models with Missing Data BMTME Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis bnclassify Learning Discrete Bayesian Network Classifiers from Data bnClustOmics Bayesian Network-Based Clustering of Multi-Omics Data bndovb Bounding Omitted Variable Bias Using Auxiliary Data bnlearn Bayesian Network Structure Learning, Parameter Learning and Inference bnma Bayesian Network Meta-Analysis using 'JAGS' bnmonitor An Implementation of Sensitivity Analysis in Bayesian Networks bnnSurvival Bagged k-Nearest Neighbors Survival Prediction bnpa Bayesian Networks & Path Analysis BNPdensity Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures BNPmix Bayesian Nonparametric Mixture Models BNPMIXcluster Bayesian Nonparametric Model for Clustering with Mixed Scale Variables bnpsd Simulate Genotypes from the BN-PSD Admixture Model BNPTSclust A Bayesian Nonparametric Algorithm for Time Series Clustering BNrich Pathway Enrichment Analysis Based on Bayesian Network BNSL Bayesian Network Structure Learning BNSP Bayesian Non- And Semi-Parametric Model Fitting bnspatial Spatial Implementation of Bayesian Networks and Mapping bnstruct Bayesian Network Structure Learning from Data with Missing Values bnviewer Bayesian Networks Interactive Visualization and Explainable Artificial Intelligence boa Bayesian Output Analysis Program [BOA] for MCMC BoardGames Board Games and Tools for Building Board Games bodenmiller Profiling of Peripheral Blood Mononuclear Cells using CyTOF Bodi Boosting Diversity in Regression Ensembles bodycomp Percent Body Fat Values Using Anthropometric Prediction Equations boilerpipeR Interface to the Boilerpipe Java Library BOIN Bayesian Optimal INterval [BOIN] Design for Single-Agent and Drug- Combination Phase I Clinical Trials BOJ Interface to Bank of Japan Statistics bolasso Model Consistent Lasso Estimation Through the Bootstrap bold Interface to Bold Systems API Bolstad Functions for Elementary Bayesian Inference Bolstad2 Bolstad Functions BoltzMM Boltzmann Machines with MM Algorithms bondAnalyst Methods for Fixed-Income Valuation, Risk and Return BondValuation Fixed Coupon Bond Valuation Allowing for Odd Coupon Periods and Various Day Count Conventions BoneProfileR Tools to Study Bone Compactness BonEV An Improved Multiple Testing Procedure for Controlling False Discovery Rates bonsai Model Wrappers for Tree-Based Models bookdown Authoring Books and Technical Documents with R Markdown bookdownplus Generate Assorted Books and Documents with R 'bookdown' Package BoolFilter Optimal Estimation of Partially Observed Boolean Dynamical Systems BoolNet Construction, Simulation and Analysis of Boolean Networks Boom Bayesian Object Oriented Modeling BoomSpikeSlab MCMC for Spike and Slab Regression BoostMLR Boosting for Multivariate Longitudinal Responses boostmtree Boosted Multivariate Trees for Longitudinal Data boot Bootstrap Functions [Originally by Angelo Canty for S] boot.heterogeneity A Bootstrap-Based Heterogeneity Test for Meta-Analysis boot.pval Bootstrap p-Values bootcluster Bootstrapping Estimates of Clustering Stability bootComb Combine Parameter Estimates via Parametric Bootstrap bootCT Bootstrapping the ARDL Tests for Cointegration bootES Bootstrap Confidence Intervals on Effect Sizes bootf2 Simulation and Comparison of Dissolution Profiles bootGOF Bootstrap Based Goodness-of-Fit Tests bootImpute Bootstrap Inference for Multiple Imputation bootLR Bootstrapped Confidence Intervals for [Negative] Likelihood Ratio Tests BootMRMR Bootstrap-MRMR Technique for Informative Gene Selection bootnet Bootstrap Methods for Various Network Estimation Routines bootPLS Bootstrap Hyperparameter Selection for PLS Models and Extensions BootPR Bootstrap Prediction Intervals and Bias-Corrected Forecasting bootruin A Bootstrap Test for the Probability of Ruin in the Classical Risk Process bootStepAIC Bootstrap stepAIC bootstrap Functions for the Book "An Introduction to the Bootstrap" bootstrapFP Bootstrap Algorithms for Finite Population Inference BootstrapQTL Bootstrap cis-QTL Method that Corrects for the Winner's Curse bootSVD Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data bootUR Bootstrap Unit Root Tests BootWPTOS Test Stationarity using Bootstrap Wavelet Packet Tests Boov Boolean Operations on Volumes Boptbd Bayesian Optimal Block Designs bor Transforming Behavioral Observation Records into Data Matrices boral Bayesian Ordination and Regression AnaLysis borrowr Estimate Causal Effects with Borrowing Between Data Sources Boruta Wrapper Algorithm for All Relevant Feature Selection BOSO Bilevel Optimization Selector Operator BosonSampling Classical Boson Sampling BoSSA A Bunch of Structure and Sequence Analysis BOSSreg Best Orthogonalized Subset Selection [BOSS] botor 'AWS Python SDK' ['boto3'] for R BoundEdgeworth Bound on the Error of the First-Order Edgeworth Expansion boundingbox Create a Bounding Box in an Image boussinesq Analytic Solutions for [Ground-Water] Boussinesq Equation boutliers Outlier Detection and Influence Diagnostics for Meta-Analysis BoutrosLab.plotting.general Functions to Create Publication-Quality Plots box Write Reusable, Composable and Modular R Code boxplotdbl Double Box Plot for Two-Axes Correlation boxr Interface for the 'Box.com API' bp Blood Pressure Analysis in R bpa Basic Pattern Analysis bpAcc Blood Pressure Device Accuracy Evaluation: Statistical Considerations bpbounds Nonparametric Bounds for the Average Causal Effect Due to Balke and Pearl and Extensions bpca Biplot of Multivariate Data Based on Principal Components Analysis bpcp Beta Product Confidence Procedure for Right Censored Data bpDir Boxplots for Directional Data bpgmm Bayesian Model Selection Approach for Parsimonious Gaussian Mixture Models BPM Bayesian Purity Model to Estimate Tumor Purity bpnreg Bayesian Projected Normal Regression Models for Circular Data bpp Computations Around Bayesian Predictive Power bpr Fitting Bayesian Poisson Regression bqror Bayesian Quantile Regression for Ordinal Models bqtl Bayesian QTL Mapping Toolkit bRacatus A Method to Estimate the Accuracy and Biogeographical Status of Georeferenced Biological Data bracer Brace Expansions BRACoD.R BRACoD: Bayesian Regression Analysis of Compositional Data BradleyTerry2 Bradley-Terry Models braggR Calculate the Revealed Aggregator of Probability Predictions braidReports Visualize Combined Action Response Surfaces and Report BRAID Analyses braidrm Fitting Dose Response with the BRAID Combined Action Model BrailleR Improved Access for Blind Users BrainCon Inference the Partial Correlations Based on Time Series Data brainGraph Graph Theory Analysis of Brain MRI Data brainKCCA Region-Level Connectivity Network Construction via Kernel Canonical Correlation Analysis brainR Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging BranchGLM Efficient Branch and Bound Variable Selection for GLMs using 'RcppArmadillo' Branching Simulation and Estimation for Branching Processes brandwatchR 'Brandwatch' API to R brant Test for Parallel Regression Assumption braQCA Bootstrapped Robustness Assessment for Qualitative Comparative Analysis brassica 1970s BASIC Interpreter bravo Bayesian Screening and Variable Selection BrazilMet Download and Processing of Automatic Weather Stations [AWS] Data of INMET-Brazil BRDT Binomial Reliability Demonstration Tests brea Bayesian Recurrent Event Analysis bread Analyze Big Files Without Loading Them in Memory breakaway Species Richness Estimation and Modeling breakDown Model Agnostic Explainers for Individual Predictions breakfast Methods for Fast Multiple Change-Point Detection and Estimation breakpoint An R Package for Multiple Break-Point Detection via the Cross-Entropy Method BreakPoints Identify Breakpoints in Series of Data breathtestcore Core Functions to Read and Fit 13c Time Series from Breath Tests breathteststan Stan-Based Fit to Gastric Emptying Curves bReeze Functions for Wind Resource Assessment BRETIGEA Brain Cell Type Specific Gene Expression Analysis brew Templating Framework for Report Generation brglm Bias Reduction in Binomial-Response Generalized Linear Models brglm2 Bias Reduction in Generalized Linear Models bridgedist An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis [2003] bridger Bridge Hand Generator with Criteria Selector bridger2 Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data bridgesampling Bridge Sampling for Marginal Likelihoods and Bayes Factors briKmeans Package for Brik, Fabrik and Fdebrik Algorithms to Initialise Kmeans BRINDA Computation of BRINDA Adjusted Micronutrient Biomarkers for Inflammation brinton A Graphical EDA Tool brio Basic R Input Output briqr Interface to the 'Briq' API BRISC Fast Inference for Large Spatial Datasets using BRISC brisk Bayesian Benefit Risk Analysis briskaR Biological Risk Assessment BRL Beta Record Linkage brlrmr Bias Reduction with Missing Binary Response brm Binary Regression Model brms Bayesian Regression Models using 'Stan' brmsmargins Bayesian Marginal Effects for 'brms' Models brnn Bayesian Regularization for Feed-Forward Neural Networks Brobdingnag Very Large Numbers in R brokenstick Broken Stick Model for Irregular Longitudinal Data brolgar Browse Over Longitudinal Data Graphically and Analytically in R broman Karl Broman's R Code broom Convert Statistical Objects into Tidy Tibbles broom.helpers Helpers for Model Coefficients Tibbles broom.mixed Tidying Methods for Mixed Models brotli A Compression Format Optimized for the Web BrownDog Brown Dog R Interface brpop Brazilian Population Estimatives Brq Bayesian Analysis of Quantile Regression Models brr Bayesian Inference on the Ratio of Two Poisson Rates brranching Fetch 'Phylogenies' from Many Sources bruceR Broadly Useful Convenient and Efficient R Functions BRugs Interface to the 'OpenBUGS' MCMC Software brulee High-Level Modeling Functions with 'torch' Brundle Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data brunnermunzel [Permuted] Brunner-Munzel Test brxx Bayesian Test Reliability Estimation bs4cards Generate Bootstrap Cards bs4Dash A 'Bootstrap 4' Version of 'shinydashboard' BSagri Safety Assessment in Agricultural Field Trials bsam Bayesian State-Space Models for Animal Movement bsamGP Bayesian Spectral Analysis Models using Gaussian Process Priors BSBT The Bayesian Spatial Bradley–Terry Model BSDA Basic Statistics and Data Analysis bsearchtools Binary Search Tools bshazard Nonparametric Smoothing of the Hazard Function bSims Bird Point Count Simulator BSL Bayesian Synthetic Likelihood bslib Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown' BsMD Bayes Screening and Model Discrimination bsnsing Build Decision Trees with Optimal Multivariate Splits BSPADATA Bayesian Proposal to Fit Spatial Econometric Models BSPBSS Bayesian Spatial Blind Source Separation bspec Bayesian Spectral Inference bspline B-Spline Interpolation and Regression bsplinePsd Bayesian Nonparametric Spectral Density Estimation Using B-Spline Priors bsplus Adds Functionality to the R Markdown + Shiny Bootstrap Framework bspm Bridge to System Package Manager bspmma Bayesian Semiparametric Models for Meta-Analysis bsreg Bayesian Spatial Regression Models BSS Brownian Semistationary Processes BSSasymp Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates bssm Bayesian Inference of Non-Linear and Non-Gaussian State Space Models bssn Birnbaum-Saunders Model BSSoverSpace Blind Source Separation for Multivariate Spatial Data using Eigen Analysis BSSprep Whitening Data as Preparation for Blind Source Separation bst Gradient Boosting bsTools Create HTML Content with Bootstrap 5 Classes and Layouts bstrl Bayesian Streaming Record Linkage bsts Bayesian Structural Time Series bsub Submitter and Monitor of the 'LSF Cluster' bsvars Bayesian Estimation of Structural Vector Autoregressive Models BSW Fitting a Log-Binomial Model using the Bekhit-Schöpe-Wagenpfeil [BSW] Algorithm btb Beyond the Border - Kernel Density Estimation for Urban Geography BTdecayLasso Bradley-Terry Model with Exponential Time Decayed Log-Likelihood and Adaptive Lasso btergm Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood BTLLasso Modelling Heterogeneity in Paired Comparison Data BTM Biterm Topic Models for Short Text BTSPAS Bayesian Time-Stratified Population Analysis BTSR Bounded Time Series Regression BTYD Implementing BTYD Models with the Log Sum Exp Patch BTYDplus Probabilistic Models for Assessing and Predicting your Customer Base bubblyr Beautiful Bubbles for 'shiny' and 'rmarkdown' Backgrounds bucky Bucky's Archive for Data Analysis in the Social Sciences BUCSS Bias and Uncertainty Corrected Sample Size Buddle A Deep Learning for Statistical Classification and Regression Analysis with Random Effects buffeRs Buffer Generation for Spatial Models buildmer Stepwise Elimination and Term Reordering for Mixed-Effects Regression buildr Organize & Run Build Scripts Comfortably BuildSys System for Building and Debugging C/C++ Dynamic Libraries bujar Buckley-James Regression for Survival Data with High-Dimensional Covariates bulkAnalyseR Interactive Shiny App for Bulk Sequencing Data bulletcp Automatic Groove Identification via Bayesian Changepoint Detection bulletr Algorithms for Matching Bullet Lands bullishTrader Bullish Trading Strategies Through Graphs bullwhipgame Bullwhip Effect Demo in Shiny bumbl Tools for Modeling Bumblebee Colony Growth and Decline bumblebee Quantify Disease Transmission Within and Between Population Groups bunching Estimate Bunching bunchr Analyze Bunching in a Kink or Notch Setting bundesbank Download Data from Bundesbank bundesligR All Final Tables of the Bundesliga bundle Serialize Model Objects with a Consistent Interface bupaR Business Process Analysis in R bupaverse Easily Install and Load the 'bupaverse' burnr Forest Fire History Analysis BurStFin Burns Statistics Financial BurStMisc Burns Statistics Miscellaneous bursts Markov Model for Bursty Behavior in Streams busdater Standard Date Calculations for Business BusinessDuration Calculates Business Duration Between Two Dates butcher Model Butcher BuyseTest Generalized Pairwise Comparisons Bvalue B-Value and Empirical Equivalence Bound BVAR Hierarchical Bayesian Vector Autoregression bvarsv Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters bvartools Bayesian Inference of Vector Autoregressive and Error Correction Models BVARverse Tidy Bayesian Vector Autoregression bvls The Stark-Parker algorithm for bounded-variable least squares bvpSolve Solvers for Boundary Value Problems of Differential Equations BVSNLP Bayesian Variable Selection in High Dimensional Settings using Nonlocal Priors bwd Backward Procedure for Change-Point Detection bWGR Bayesian Whole-Genome Regression BWGS BreedWheat Genomic Selection Pipeline bwimage Describe Image Patterns in Natural Structures BwQuant Bandwidth Selectors for Local Linear Quantile Regression bws Bayesian Weighted Sums BWStest Baumgartner Weiss Schindler Test of Equal Distributions bwsTools Tools for Case 1 Best-Worst Scaling [MaxDiff] Designs bysykkel Get City Bike Data from Norway bytescircle Statistics About Bytes Contained in a File as a Circle Plot bzinb Bivariate Zero-Inflated Negative Binomial Model Estimator c060 Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models C19dNUTS Dataset of Regional COVID-19 Deaths per 100,000 Pop [NUTS] c212 Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems [System Organ Classes] c2c Compare Two Classifications or Clustering Solutions of Varying Structure c2d4u.tools 'c2d4u' - CRAN Packages for 'Ubuntu' c3 'C3.js' Chart Library c3net Inferring Large-Scale Gene Networks with C3NET C443 See a Forest for the Trees C50 C5.0 Decision Trees and Rule-Based Models ca Simple, Multiple and Joint Correspondence Analysis CA3variants Three-Way Correspondence Analysis Variants cabinets Project Specific Workspace Organization Templates cabootcrs Bootstrap Confidence Regions for Simple and Multiple Correspondence Analysis cacc Conjunctive Analysis of Case Configurations cache Cache and Retrieve Computation Results cachem Cache R Objects with Automatic Pruning CACIMAR Cross-Species Analysis of Cell Identities, Markers and Regulations cacIRT Classification Accuracy and Consistency under Item Response Theory CaDENCE Conditional Density Estimation Network Construction and Evaluation CADFtest A Package to Perform Covariate Augmented Dickey-Fuller Unit Root Tests CADStat Provides a GUI to Several Statistical Methods caesar Encrypts and Decrypts Strings caffsim Simulation of Plasma Caffeine Concentrations by Using Population Pharmacokinetic Model cAIC4 Conditional Akaike Information Criterion for 'lme4' and 'nlme' CAinterprTools Graphical Aid in Correspondence Analysis Interpretation and Significance Testings Cairo R Graphics Device using Cairo Graphics Library for Creating High-Quality Bitmap [PNG, JPEG, TIFF], Vector [PDF, SVG, PostScript] and Display [X11 and Win32] Output CAISEr Comparison of Algorithms with Iterative Sample Size Estimation calACS Calculations for All Common Subsequences CALANGO Comparative Analysis with Annotation-Based Genomic Components Calculator.LR.FNs Calculator for LR Fuzzy Numbers calculus High Dimensional Numerical and Symbolic Calculus calcUnique Simple Wrapper for Computationally Expensive Functions calcWOI Calculates the Wavelet-Based Organization Index calendar Create, Read, Write, and Work with 'iCalander' Files, Calendars and Scheduling Data calendR Ready to Print Monthly and Yearly Calendars Made with 'ggplot2' calendRio 'calendR' Fork with Additional Features [Backwards Compatible] CALF Coarse Approximation Linear Function CALIBERrfimpute Multiple Imputation Using MICE and Random Forest calibrar Automated Parameter Estimation for Complex [Ecological] Models calibrate Calibration of Scatterplot and Biplot Axes calibrateBinary Calibration for Computer Experiments with Binary Responses CalibrateSSB Weighting and Estimation for Panel Data with Non-Response calibrationband Calibration Bands CalibrationCurves Calibration Performance calibrator Bayesian Calibration of Complex Computer Codes CalibratR Mapping ML Scores to Calibrated Predictions calidad Assesses the Quality of Estimates Made by Complex Sample Designs callr Call R from R calmate Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation calpassapi R Interface to Access CalPASS API CalSim The Calibration Simplex CAMAN Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN camcorder Record Your Plot History CamelUp 'CamelUp' Board Game as a Teaching Aid for Introductory Statistics camerondata Datasets from "Microeconometrics: Methods and Applications" by Cameron and Trivedi CAMML Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling campaignmanageR Connect to Campaign Manager via the 'Windsor.ai' API campfin Wrangle Campaign Finance Data campsis Generic PK/PD Simulation Platform CAMPSIS campsismod Generic Implementation of a PK/PD Model camsRad Client for CAMS Radiation Service caMST Mixed Computerized Adaptive Multistage Testing camtrapR Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses canadacovid API Wrapper for the Canadian COVID-19 Tracker canadamaps Maps of the Political and Administrative Divisions of Canada canadianmaps Canadian Mapping Made Easy canaper Categorical Analysis of Neo- And Paleo-Endemism cancensus Access, Retrieve, and Work with Canadian Census Data and Geography CancerEvolutionVisualization Publication Quality Phylogenetic Tree Plots cancerGI Analyses of Cancer Gene Interaction CancerGram Prediction of Anticancer Peptides cancerTiming Estimation of Temporal Ordering of Cancer Abnormalities candisc Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis Canek Batch Correction of Single Cell Transcriptome Data Canopy Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing canprot Chemical Metrics of Differentially Expressed Proteins cansim Accessing Statistics Canada Data Table and Vectors CANSIM2R Directly Extracts Complete CANSIM Data Tables canvasXpress Visualization Package for CanvasXpress in R canvasXpress.data Datasets for the 'canvasXpress' Package cap Covariate Assisted Principal [CAP] Regression for Covariance Matrix Outcomes cape Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice caper Comparative Analyses of Phylogenetics and Evolution in R capitalR Capital Budgeting Analysis, Annuity Loan Calculations and Amortization Schedules capl Compute and Visualize CAPL-2 Scores and Interpretations capm Companion Animal Population Management capn Capital Asset Pricing for Nature CaPO4Sim A Virtual Patient Simulator in the Context of Calcium and Phosphate Homeostasis captioner Numbers Figures and Creates Simple Captions captr Client for the Captricity API capushe CAlibrating Penalities Using Slope HEuristics car Companion to Applied Regression caracas Computer Algebra caRamel Automatic Calibration by Evolutionary Multi Objective Algorithm carat Covariate-Adaptive Randomization for Clinical Trials CARBayes Spatial Generalised Linear Mixed Models for Areal Unit Data CARBayesdata Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages CARBayesST Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data carbonate Interact with 'carbon.js' carcass Estimation of the Number of Fatalities from Carcass Searches card Cardiovascular and Autonomic Research Design carData Companion to Applied Regression Data Sets cardidates Identification of Cardinal Dates in Ecological Time Series care High-Dimensional Regression and CAR Score Variable Selection caRecall Government of Canada Vehicle Recalls Database API Wrapper careless Procedures for Computing Indices of Careless Responding caret Classification and Regression Training caretEnsemble Ensembles of Caret Models caretForecast Conformal Time Series Forecasting Using State of Art Machine Learning Algorithms carfima Continuous-Time Fractionally Integrated ARMA Process for Irregularly Spaced Long-Memory Time Series Data caribou Estimation of Caribou Abundance Based on Radio Telemetry Data CARlasso Conditional Autoregressive LASSO CarletonStats Functions for Statistics Classes at Carleton College Carlson Carlson Elliptic Integrals and Incomplete Elliptic Integrals caROC Continuous Biomarker Evaluation with Adjustment of Covariates caroline A Collection of Database, Data Structure, Visualization, and Utility Functions for R carpenter Build Common Tables of Summary Statistics for Reports caRpools CRISPR AnalyzeR for Pooled CRISPR Screens carrier Isolate Functions for Remote Execution CARRoT Predicting Categorical and Continuous Outcomes Using One in Ten Rule carSurv Correlation-Adjusted Regression Survival [CARS] Scores cartograflow Filtering Matrix for Flow Mapping cartogram Create Cartograms with R cartogramR Continuous Cartogram cartography Thematic Cartography casabourse Casablanca Stock Exchange Data Cascade Selection, Reverse-Engineering and Prediction in Cascade Networks CascadeData Experimental Data of Cascade Experiments in Genomics CASCORE Covariate Assisted Spectral Clustering on Ratios of Eigenvectors cascsim Casualty Actuarial Society Individual Claim Simulator casebase Fitting Flexible Smooth-in-Time Hazards and Risk Functions via Logistic and Multinomial Regression caseMatch Identify Similar Cases for Qualitative Case Studies casino Play Casino Games CASMAP Detection of Statistically Significant Combinations of SNPs in Association Mapping CASMI 'CASMI'-Based Functions cassandRa Finds Missing Links and Metric Confidence Intervals in Ecological Bipartite Networks cassowaryr Compute Scagnostics on Pairs of Numeric Variables in a Data Set CAST 'caret' Applications for Spatial-Temporal Models castor Efficient Phylogenetics on Large Trees cat Analysis and Imputation of Categorical-Variable Datasets with Missing Values cat2cat Handling an Inconsistently Coded Categorical Variable in a Panel Dataset cata Analysis of Check-All-that-Apply [CATA] Data catalog Access the 'Spark Catalog' API via 'sparklyr' CatastRo Interface to the API 'Sede Electronica Del Catastro' catch Covariate-Adjusted Tensor Classification in High-Dimensions catcont Test, Identify, Select and Mutate Categorical or Continuous Values catdap Categorical Data Analysis Program Package catdata Categorical Data CatDataAnalysis Datasets for Categorical Data Analysis by Agresti CatDyn Fishery Stock Assessment by Catch Dynamics Models cate High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation categoryEncodings Category Variable Encodings catenary Fits a Catenary to Given Points CatEncoders Encoders for Categorical Variables catfun Categorical Data Analysis cati Community Assembly by Traits: Individuals and Beyond catIrt Simulate IRT-Based Computerized Adaptive Tests catlearn Formal Psychological Models of Categorization and Learning catmap Case-Control and TDT Meta-Analysis Package catmaply Heatmap for Categorical Data using 'plotly' catnet Categorical Bayesian Network Inference caTools Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc CatPredi Optimal Categorisation of Continuous Variables in Prediction Models catR Generation of IRT Response Patterns under Computerized Adaptive Testing CatReg Solution Paths for Linear and Logistic Regression Models with Categorical Predictors, with SCOPE Penalty cats Cohort Platform Trial Simulation catseyes Create Catseye Plots Illustrating the Normal Distribution of the Means catsim Binary and Categorical Image Similarity Index catSurv Computerized Adaptive Testing for Survey Research CATT The Cochran-Armitage Trend Test CATTexact Computation of the p-Value for the Exact Conditional Cochran-Armitage Trend Test cattonum Encode Categorical Features CauchyCP Powerful Test for Survival Data under Non-Proportional Hazards cauchypca Robust Principal Component Analysis Using the Cauchy Distribution causact Accelerated Bayesian Analytics with DAGs causal.decomp Causal Decomposition Analysis causaldata Example Data Sets for Causal Inference Textbooks causalDisco Tools for Causal Discovery on Observational Data causaldrf Estimating Causal Dose Response Functions causaleffect Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models CausalGAM Estimation of Causal Effects with Generalized Additive Models CausalGPS Matching on Generalized Propensity Scores with Continuous Exposures CausalImpact Inferring Causal Effects using Bayesian Structural Time-Series Models CausalKinetiX Learning Stable Structures in Kinetic Systems CausalMBSTS MBSTS Models for Causal Inference and Forecasting CausalModels Causal Inference Modeling for Estimation of Causal Effects causaloptim An Interface to Specify Causal Graphs and Compute Bounds on Causal Effects causalOT Optimal Transport Weights for Causal Inference causalPAF Causal Effect for Population Attributable Fractions [PAF] CausalQueries Make, Update, and Query Binary Causal Models causalsens Selection Bias Approach to Sensitivity Analysis for Causal Effects causalweight Estimation Methods for Causal Inference Based on Inverse Probability Weighting CausCor Calculate Correlations and Estimate Causality CautiousLearning Control Charts with Guaranteed In-Control Performance and Cautious Parameters Learning CAvariants Correspondence Analysis Variants CB2 CRISPR Pooled Screen Analysis using Beta-Binomial Test cba Clustering for Business Analytics cbanalysis Coffee Break Descriptive Analysis CBCgrps Compare Baseline Characteristics Between Groups cbinom Continuous Analog of a Binomial Distribution cbioportalR Browse and Query Clinical and Genomic Data from cBioPortal cbl Causal Discovery under a Confounder Blanket CBPS Covariate Balancing Propensity Score cbq Conditional Binary Quantile Models cbsodataR Statistics Netherlands [CBS] Open Data API Client CBSr Fits Cubic Bezier Spline Functions to Intertemporal and Risky Choice Data CBT Confidence Bound Target Algorithm CC Control Charts CCA Canonical Correlation Analysis CCAMLRGIS Antarctic Spatial Data Manipulation ccaPP [Robust] Canonical Correlation Analysis via Projection Pursuit cccd Class Cover Catch Digraphs cccm Crossed Classification Credibility Model cccp Cone Constrained Convex Problems cccrm Concordance Correlation Coefficient for Repeated [and Non-Repeated] Measures ccda Combined Cluster and Discriminant Analysis ccdf Distribution-Free Single-Cell Differential Expression Analysis cchs Cox Model for Case-Cohort Data with Stratified Subcohort-Selection cchsflow Transforming and Harmonizing CCHS Variables ccid Cross-Covariance Isolate Detect: a New Change-Point Method for Estimating Dynamic Functional Connectivity cclust Convex Clustering Methods and Clustering Indexes CCM Correlation Classification Method ccmEstimator Comparative Causal Mediation Estimation ccml Consensus Clustering for Different Sample Coverage Data ccmm Compositional Mediation Model ccmReportR Wraps 'CCM' with Utility Functions ccoptimalmatch Implementation of Case-Control Optimal Matching ccostr Estimation of Mean Costs in Censored Data CCP Significance Tests for Canonical Correlation Analysis [CCA] ccpsyc Methods for Cross-Cultural Psychology ccRemover Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data ccrs Correct and Cluster Response Style Biased Data ccrtm Coupled Chain Radiative Transfer Models ccss Cluster Circular Systematic Sampling ccTensor CUR/CX Tensor Decomposition cctools Tools for the Continuous Convolution Trick in Nonparametric Estimation CCTpack Consensus Analysis, Model-Based Clustering, and Cultural Consensus Theory Applications CCWeights Perform Weighted Linear Regression for Calibration Curve cd CD Data for Entity Resolution cdata Fluid Data Transformations cdcatR Cognitive Diagnostic Computerized Adaptive Testing cdcfluview Retrieve Flu Season Data from the United States Centers for Disease Control and Prevention ['CDC'] 'FluView' Portal cdcsis Conditional Distance Correlation Based Feature Screening and Conditional Independence Inference cder Interface to the California Data Exchange Center cdfquantreg Quantile Regression for Random Variables on the Unit Interval CDFt Downscaling and Bias Correction via Non-Parametric CDF-Transform CDLasso Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression cdlei Cause-Deleted Life Expectancy Improvement Procedure cdlTools Tools to Download and Work with USDA Cropscape Data CDM Cognitive Diagnosis Modeling CDMConnector Connect to an OMOP Common Data Model cdmTools Useful Tools for Cognitive Diagnosis Modeling CDNmoney Components of Canadian Monetary and Credit Aggregates cdom R Functions to Model CDOM Spectra cdparcoord Top Frequency-Based Parallel Coordinates cdrcR Load 'CDRC' Data CDROM Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data cds Constrained Dual Scaling for Detecting Response Styles CDVineCopulaConditional Sampling from Conditional C- and D-Vine Copulas CEDA CRISPR Screen and Gene Expression Differential Analysis CEDARS Simple and Efficient Pipeline for Electronic Health Record Annotation ceg Chain Event Graph CEGO Combinatorial Efficient Global Optimization celestial Collection of Common Astronomical Conversion Routines and Functions cellOrigins Finds RNASeq Source Tissues Using In Situ Hybridisation Data cellpypes Cell Type Pipes for Single-Cell RNA Sequencing Data cellranger Translate Spreadsheet Cell Ranges to Rows and Columns celltrackR Motion Trajectory Analysis cellVolumeDist Functions to Fit Cell Volume Distributions and Thereby Estimate Cell Growth Rates and Division Times cellWise Analyzing Data with Cellwise Outliers cem Coarsened Exact Matching CenBAR Broken Adaptive Ridge AFT Model with Censored Data CENFA Climate and Ecological Niche Factor Analysis cenGAM Censored Regression with Smooth Terms censable Making Census Data More Usable censCov Linear Regression with a Randomly Censored Covariate censo2017 Base de Datos de Facil Acceso del Censo 2017 de Chile [2017 Chilean Census Easy Access Database] censorcopula Estimate Parameter of Bivariate Copula censored 'parsnip' Engines for Survival Models censReg Censored Regression [Tobit] Models CensSpatial Censored Spatial Models Census2016 Data from the Australian Census 2016 censusapi Retrieve Data from the Census APIs censusGeography Changes United States Census Geographic Code into Name of Location censusr Collect Data from the Census API censusxy Access the U.S. Census Bureau's Geocoding A.P.I. System censys Tools to Query the 'Censys' API centiserve Find Graph Centrality Indices centralplot Show the Strength of Relationships Between Centre and Peripheral Items centrifugeR Non-Trivial Balance of Centrifuge Rotors CEOdata Datasets of the CEO [Centre d'Estudis d'Opinio] for Opinion Polls in Catalonia CEoptim Cross-Entropy R Package for Optimization CePa Centrality-Based Pathway Enrichment cepiigeodist CEPII's GeoDist Datasets cepp Context Driven Exploratory Projection Pursuit cepR Busca CEPs Brasileiros cepreader Read 'CEP' and Legacy 'CANOCO' Files ceramic Download Online Imagery Tiles CERFIT Causal Effect Random Forest of Interaction Tress CerioliOutlierDetection Outlier Detection Using the Iterated RMCD Method of Cerioli [2010] CeRNASeek Identification and Analysis of ceRNA Regulation ceRtainty Certainty Equivalent Certara.R Easily Install Pharmacometric Packages and Shiny Applications Developed by Certara ceser Cluster Estimated Standard Errors cesR Access the Canadian Election Study Datasets cetcolor CET Perceptually Uniform Colour Maps ceterisParibus Ceteris Paribus Profiles cfa Configural Frequency Analysis [CFA] CFAcoop Colony Formation Assay: Taking into Account Cellular Cooperation cfbfastR Access College Football Play by Play Data CFC Cause-Specific Framework for Competing-Risk Analysis cfda Categorical Functional Data Analysis cfdecomp Counterfactual Decomposition: MC Integration of the G-Formula CFF Simple Similarity for User-Based Collaborative Filtering Systems cffdrs Canadian Forest Fire Danger Rating System cffr Generate Citation File Format ['cff'] Metadata for R Packages cfid Identification of Counterfactual Queries in Causal Models CFilt Collaborative Filtering by Reference Classes cfma Causal Functional Mediation Analysis cfmortality Cystic Fibrosis Survival Prediction Model Based on Stanojevic Model cforward Forward Selection using Concordance/C-Index cft Climate Futures Toolbox cg Compare Groups, Analytically and Graphically cgaim Constrained Groupwise Additive Index Models cgal4h 'CGAL' Version 4 C++ Header Files cgalMeshes R6 Based Utilities for 3D Meshes using 'CGAL' cgam Constrained Generalized Additive Model cgAUC Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it CGE Computing General Equilibrium CGGP Composite Grid Gaussian Processes cghRA Array CGH Data Analysis and Visualization cglasso Conditional Graphical LASSO for Gaussian Graphical Models with Censored and Missing Values cglm Fits Conditional Generalized Linear Models cgmanalysis Clean and Analyze Continuous Glucose Monitor Data CGManalyzer Continuous Glucose Monitoring Data Analyzer cgmquantify Analyzing Glucose and Glucose Variability CGNM Cluster Gauss-Newton Method CGP Composite Gaussian Process Models CGPfunctions Powell Miscellaneous Functions for Teaching and Learning Statistics cgraph Computational Graphs cgrcusum Continuous Time Generalized Rapid Response CUSUM cgwtools Miscellaneous Tools ch About some Small Functions ChainLadder Statistical Methods and Models for Claims Reserving in General Insurance chameleon Automatic Colors for Multi-Dimensional Data chandwich Chandler-Bate Sandwich Loglikelihood Adjustment changepoint Methods for Changepoint Detection changepoint.geo Geometrically Inspired Multivariate Changepoint Detection changepoint.influence Package to Calculate the Influence of the Data on a Changepoint Segmentation changepoint.np Methods for Nonparametric Changepoint Detection changepoints A Collection of Change-Point Detection Methods changepointsHD Change-Point Estimation for Expensive and High-Dimensional Models changepointsVar Change-Points Detections for Changes in Variance ChangePointTaylor Identify Changes in Mean ChangepointTesting Change Point Estimation for Clustered Signals changepointTests Change Point Tests for Joint Distributions and Copulas changer Change R Package Name ChannelAttribution Markov Model for Online Multi-Channel Attribution ChannelAttributionApp Shiny Web Application for the Multichannel Attribution Problem chantrics Loglikelihood Adjustments for Econometric Models Chaos01 0-1 Test for Chaos ChaosGame Chaos Game charlatan Make Fake Data chartql Simplified Language for Plots and Charts cheatsheet Download R Cheat Sheets Locally checkarg Check the Basic Validity of a [Function] Argument CheckDigit Calculate and Verify Check Digits checkdown Check-Fields and Check-Boxes for 'rmarkdown' checkLuhn Checks if a Number is Valid Using the Luhn Algorithm checkmate Fast and Versatile Argument Checks checkpoint Install Packages from Snapshots on the Checkpoint Server for Reproducibility checkr Check the Properties of Common R Objects cheddar Analysis and Visualisation of Ecological Communities cheem Interactively Explore the Support of Local Explanations with the Radial Tour cheese Tools for Working with Data During Statistical Analysis chemCal Calibration Functions for Analytical Chemistry chemmodlab A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models chemodiv Analysing Chemodiversity of Phytochemical Data chemometrics Multivariate Statistical Analysis in Chemometrics ChemoSpec Exploratory Chemometrics for Spectroscopy ChemoSpec2D Exploratory Chemometrics for 2D Spectroscopy ChemoSpecUtils Functions Supporting Packages ChemoSpec and ChemoSpec2D cherry Multiple Testing Methods for Exploratory Research cherryblossom Cherry Blossom Run Race Results chess Read, Write, Create and Explore Chess Games chest Change-in-Estimate Approach to Assess Confounding Effects CHFF Closest History Flow Field Forecasting for Bivariate Time Series chi The Chi Distribution chicane Capture Hi-C Analysis Engine chickn 'Compressive' Hierarchical Kernel Clustering Toolbox childdevdata Child Development Data childesr Accessing the 'CHILDES' Database childsds Data and Methods Around Reference Values in Pediatrics chilemapas Mapas de las Divisiones Politicas y Administrativas de Chile [Maps of the Political and Administrative Divisions of Chile] ChillModels Processing Chill and Heat Models for Temperate Fruit Trees chillR Statistical Methods for Phenology Analysis in Temperate Fruit Trees chinese.misc Miscellaneous Tools for Chinese Text Mining and More ChineseNames Chinese Name Database 1930-2008 chipPCR Toolkit of Helper Functions to Pre-Process Amplification Data ChIPtest Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data chirps API Client for CHIRPS and CHIRTS chisq.posthoc.test A Post Hoc Analysis for Pearson's Chi-Squared Test for Count Data chisquare Chi-Square and G-Square Test of Independence, Residual Analysis, and Measures of Categorical Association chk Check User-Supplied Function Arguments chkptstanr Checkpoint MCMC Sampling with 'Stan' chlorpromazineR Convert Antipsychotic Doses to Chlorpromazine Equivalents CHMM Coupled Hidden Markov Models CHNCapitalStock Compute Chinese Capital Stocks chngpt Estimation and Hypothesis Testing for Threshold Regression CHNOSZ Thermodynamic Calculations and Diagrams for Geochemistry choiceDes Design Functions for Choice Studies ChoiceModelR Choice Modeling in R CHOIRBM Plots the CHOIR Body Map cholera Amend, Augment and Aid Analysis of John Snow's Cholera Map CholWishart Cholesky Decomposition of the Wishart Distribution choplump Permutation Test for Some Positive and Many Zero Responses chopthin The Chopthin Resampler ChoR Chordalysis R Package chords Estimation in Respondent Driven Samples choroplethr Simplify the Creation of Choropleth Maps in R choroplethrAdmin1 Contains an Administrative-Level-1 Map of the World choroplethrMaps Contains Maps Used by the 'choroplethr' Package christmas Generation of Different Animated Christmas Cards chromConverter Chromatographic File Converter chromer Interface to Chromosome Counts Database API chromoMap Interactive Genomic Visualization of Biological Data chromote Headless Chrome Web Browser Interface chromseq Split Chromosome 'Fasta' File chron Chronological Objects which can Handle Dates and Times chronicle Grammar for Creating R Markdown Reports chronicler Add Logging to Functions chronochrt Creating Chronological Charts chronosphere Earth System History Variables CHsharp Choi and Hall Style Data Sharpening chunked Chunkwise Text-File Processing for 'dplyr' chunkhooks Chunk Hooks for 'R Markdown' chunkR Read Tables in Chunks chyper Functions for Conditional Hypergeometric Distributions CIAAWconsensus Isotope Ratio Meta-Analysis CIARA Cluster Independent Algorithm for Rare Cell Types Identification CICA Clusterwise Independent Component Analysis ciccr Causal Inference in Case-Control Studies cicerone Provide Tours of 'Shiny' Applications CIDER Meta-Clustering for Single-Cell Data Integration and Evaluation CIEE Estimating and Testing Direct Effects in Directed Acyclic Graphs using Estimating Equations cif Cointegrated ICU Forecasting CIFsmry Weighted summary of cumulative incidence functions cifti Toolbox for Connectivity Informatics Technology Initiative ['CIFTI'] Files ciftiTools Tools for Reading, Writing, Viewing and Manipulating CIFTI Files CIM Compositional Impact of Migration cimir Interface to the CIMIS Web API CIMTx Causal Inference for Multiple Treatments with a Binary Outcome cinaR A Computational Pipeline for Bulk 'ATAC-Seq' Profiles cinaRgenesets Ready-to-Use Curated Gene Sets for 'cinaR' CINE Classification International Normalized of Education CINID Curculionidae INstar IDentification CINmetrics Calculate Chromosomal Instability Metrics CINNA Deciphering Central Informative Nodes in Network Analysis cinterpolate Interpolation From C CIPerm Computationally-Efficient Confidence Intervals for Mean Shift from Permutation Methods CIplot Functions to Plot Confidence Interval cir Centered Isotonic Regression and Dose-Response Utilities circacompare Analyses of Circadian Data circle R Client Package for Circle CI CirclesIntersections Algorithm for Computation of the Intersection Areas of N Circles circletyper Curve Text Elements in 'Shiny' Using 'CircleType.js' circlize Circular Visualization CircMLE Maximum Likelihood Analysis of Circular Data CircNNTSR Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums [NNTS] Models CircOutlier Detection of Outliers in Circular-Circular Regression CircSpaceTime Spatial and Spatio-Temporal Bayesian Model for Circular Data CircStats Circular Statistics, from "Topics in Circular Statistics" [2001] circular Circular Statistics CircularDDM Circular Drift-Diffusion Model circularEV Extreme Value Analysis for Circular Data CircularSilhouette Fast Silhouette on Circular or Linear Data Clusters circumplex Analysis and Visualization of Circular Data cIRT Choice Item Response Theory CIS.DGLM Covariates, Interaction, and Selection for DGLM cit Causal Inference Test CITAN CITation ANalysis Toolpack citation Software Citation Tools citationchaser Perform Forward and Backwards Chasing in Evidence Syntheses citecorp Client for the Open Citations Corpus cities Clinical Trials with Intercurrent Events Simulator cito Building and Training Neural Networks ciTools Confidence or Prediction Intervals, Quantiles, and Probabilities for Statistical Models citrus Customer Intelligence Tool for Rapid Understandable Segmentation ciu Contextual Importance and Utility ciuupi2 Kabaila and Giri [2009] Confidence Interval civis R Client for the 'Civis Platform API' CJAMP Copula-Based Joint Analysis of Multiple Phenotypes cjar R Client for 'Customer Journey Analytics' ['CJA'] API cjbart Heterogeneous Effects Analysis of Conjoint Experiments cjoint AMCE Estimator for Conjoint Experiments ckanr Client for the Comprehensive Knowledge Archive Network ['CKAN'] API CKAT Composite Kernel Association Test for Pharmacogenetics Studies CKLRT Composite Kernel Machine Regression Based on Likelihood Ratio Test Ckmeans.1d.dp Optimal, Fast, and Reproducible Univariate Clustering CKMRpop Forward-in-Time Simulation and Tallying of Pairwise Relationships CLA Critical Line Algorithm in Pure R Claddis Measuring Morphological Diversity and Evolutionary Tempo cladoRcpp C++ Implementations of Phylogenetic Cladogenesis Calculations ClaimsProblems Analysis of Conflicting Claims clam Classical Age-Depth Modelling of Cores from Deposits clampSeg Idealisation of Patch Clamp Recordings ClamR Time Series Modeling for Climate Change Proxies clarifai Access to Clarifai API clarkeTest Distribution-Free Tests of Non-Nested Models class Functions for Classification ClassComparison Classes and Methods for "Class Comparison" Problems on Microarrays ClassDiscovery Classes and Methods for "Class Discovery" with Microarrays or Proteomics classGraph Construct Graphs of S4 Class Hierarchies classifierplots Generates a Visualization of Classifier Performance as a Grid of Diagnostic Plots classifly Explore Classification Models in High Dimensions classInt Choose Univariate Class Intervals classmap Visualizing Classification Results CLAST Exact Confidence Limits after a Sequential Trial cld2 Google's Compact Language Detector 2 cld3 Google's Compact Language Detector 3 clda Convolution-Based Linear Discriminant Analysis clean Fast and Easy Data Cleaning CleanBSequences Curing of Biological Sequences cleancall C Resource Cleanup via Exit Handlers cleandata To Inspect and Manipulate Data; and to Keep Track of This Process cleaner Fast and Easy Data Cleaning cleangeo Cleaning Geometries from Spatial Objects cleanNLP A Tidy Data Model for Natural Language Processing cleanrmd Clean Class-Less 'R Markdown' HTML Documents cleanTS Testbench for Univariate Time Series Cleaning cleaR Clean the R Console and Environment clespr Composite Likelihood Estimation for Spatial Data clevr Clustering and Link Prediction Evaluation in R clhs Conditioned Latin Hypercube Sampling cli Helpers for Developing Command Line Interfaces cliapp Create Rich Command Line Applications ClickClust Model-Based Clustering of Categorical Sequences ClickClustCont Mixtures of Continuous Time Markov Models ClickHouseHTTP A Simple HTTP Database Interface to 'ClickHouse' clickR Semi-Automatic Preprocessing of Messy Data with Change Tracking for Dataset Cleaning clickstream Analyzes Clickstreams Based on Markov Chains clidatajp Data from Japan Meteorological Agency cliff Execute Command Line Programs Interactively clifford Arbitrary Dimensional Clifford Algebras clifro Easily Download and Visualise Climate Data from CliFlo CliftLRD Complex-Valued Wavelet Lifting Estimators of the Hurst Exponent for Irregularly Sampled Time Series clikcorr Censoring Data and Likelihood-Based Correlation Estimation climaemet Climate AEMET Tools climateStability Estimating Climate Stability from Climate Model Data climatol Climate Tools [Series Homogenization and Derived Products] climatrends Climate Variability Indices for Ecological Modelling ClimClass Climate Classification According to Several Indices climdex.pcic PCIC Implementation of Climdex Routines clime Constrained L1-Minimization for Inverse [Covariance] Matrix Estimation climetrics Climate Change Metrics climextRemes Tools for Analyzing Climate Extremes ClimInd Climate Indices ClimMobTools API Client for the 'ClimMob' Platform ClimProjDiags Set of Tools to Compute Various Climate Indices climwin Climate Window Analysis clinDataReview Clinical Data Review Tool clinDR Simulation and Analysis Tools for Clinical Dose Response Modeling clinfun Clinical Trial Design and Data Analysis Functions clinicalsignificance Determine the Clinical Significance in Clinical Trials ClinicalTrialSummary Summary Measures for Clinical Trials with Survival Outcomes ClinicalUtilityRecal Recalibration Methods for Improved Clinical Utility of Risk Scores clinmon Hemodynamic Calculations from Clinical Monitoring clinPK Clinical Pharmacokinetics Toolkit clinsig Clinical Significance Functions ClinSigMeasures Clinical Significance Measures clinspacy Clinical Natural Language Processing using 'spaCy', 'scispaCy', and 'medspaCy' clintools Tools for Clinical Research clinUtils General Utility Functions for Analysis of Clinical Data clipp Calculating Likelihoods by Pedigree Paring clipr Read and Write from the System Clipboard CliquePercolation Clique Percolation for Networks clisymbols Unicode Symbols at the R Prompt CLME Constrained Inference for Linear Mixed Effects Models clmplus Tool-Box of Chain Ladder + Models clock Date-Time Types and Tools clockify A Wrapper for the 'Clockify' API clogitboost Boosting Conditional Logit Model clogitL1 Fitting Exact Conditional Logistic Regression with Lasso and Elastic Net Penalties clogitLasso Sparse Conditional Logistic Regression for Matched Studies CloneSeeker Seeking and Finding Clones in Copy Number and Sequencing Data CLONETv2 Clonality Estimates in Tumor clordr Composite Likelihood Inference and Diagnostics for Replicated Spatial Ordinal Data cloudml Interface to the Google Cloud Machine Learning Platform cloudos R Client Library for CloudOS cloudstoR Simplifies Access to Cloudstor API cloudUtil Cloud Utilization Plots clr Curve Linear Regression via Dimension Reduction clttools Central Limit Theorem Experiments [Theoretical and Simulation] clubSandwich Cluster-Robust [Sandwich] Variance Estimators with Small-Sample Corrections clue Cluster Ensembles ClueR Cluster Evaluation CluMP Clustering of Micro Panel Data ClusBoot Bootstrap Clustering cluscov Clustered Covariate Regression ClusPred Simultaneous Semi-Parametric Estimation of Clustering and Regression clusrank Wilcoxon Rank Tests for Clustered Data ClusROC ROC Analysis in Three-Class Classification Problems for Clustered Data ClussCluster Simultaneous Detection of Clusters and Cluster-Specific Genes in High-Throughput Transcriptome Data clust.bin.pair Statistical Methods for Analyzing Clustered Matched Pair Data clustAnalytics Cluster Evaluation on Graphs ClustAssess Tools for Assessing Clustering ClustBlock Clustering of Datasets clustcurv Determining Groups in Multiples Curves clustDRM Clustering Dose-Response Curves and Fitting Appropriate Models to Them clustEff Clusters of Effects Curves in Quantile Regression Models cluster "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al. cluster.datasets Cluster Analysis Data Sets Cluster.OBeu Cluster Analysis 'OpenBudgets.eu' clusterability Performs Tests for Cluster Tendency of a Data Set ClusterBootstrap Analyze Clustered Data with Generalized Linear Models using the Cluster Bootstrap clusterCons Consensus Clustering using Multiple Algorithms and Parameters clusterCrit Clustering Indices clusteredinterference Causal Effects from Observational Studies with Clustered Interference ClusteredMutations Location and Visualization of Clustered Somatic Mutations clusterGeneration Random Cluster Generation [with Specified Degree of Separation] clusterhap Clustering Genotypes in Haplotypes clusterHD Tools for Clustering High-Dimensional Data Clustering Techniques for Evaluating Clustering clustering.sc.dp Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint clustermole Unbiased Single-Cell Transcriptomic Data Cell Type Identification clustermq Evaluate Function Calls on HPC Schedulers [LSF, SGE, SLURM, PBS/Torque] clusternomics Integrative Clustering for Heterogeneous Biomedical Datasets clusterPower Power Calculations for Cluster-Randomized and Cluster-Randomized Crossover Trials ClusterR Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering ClusterRankTest Rank Tests for Clustered Data clusterRepro Reproducibility of Gene Expression Clusters clusterSEs Calculate Cluster-Robust p-Values and Confidence Intervals clusterSim Searching for Optimal Clustering Procedure for a Data Set ClusterStability Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions clustertend Check the Clustering Tendency ClustGeo Hierarchical Clustering with Spatial Constraints ClustImpute K-Means Clustering with Build-in Missing Data Imputation clustMD Model Based Clustering for Mixed Data clustMixType k-Prototypes Clustering for Mixed Variable-Type Data ClustMMDD Variable Selection in Clustering by Mixture Models for Discrete Data ClustOfVar Clustering of Variables ClusTorus Prediction and Clustering on the Torus by Conformal Prediction clustra Clustering Longitudinal Trajectories clusTransition Monitor Changes in Cluster Solutions of Dynamic Datasets clustrd Methods for Joint Dimension Reduction and Clustering clustree Visualise Clusterings at Different Resolutions clustringr Cluster Strings by Edit-Distance CLUSTShiny Interactive Document for Working with Cluster Analysis ClustVarLV Clustering of Variables Around Latent Variables clustvarsel Variable Selection for Gaussian Model-Based Clustering ClusVis Gaussian-Based Visualization of Gaussian and Non-Gaussian Model-Based Clustering clv Cluster Validation Techniques clValid Validation of Clustering Results CLVTools Tools for Customer Lifetime Value Estimation cmaes Covariance Matrix Adapting Evolutionary Strategy cmaesr Covariance Matrix Adaptation Evolution Strategy CMAPSS Commercial Modular Aero-Propulsion System Simulation Data Set CMapViz Representation Tool For Output Of Connectivity Map [CMap] Analysis cmaRs Implementation of the Conic Multivariate Adaptive Regression Splines in R cmbClust Conditional Mixture Modeling and Model-Based Clustering cmce Computer Model Calibration for Deterministic and Stochastic Simulators cmcR An Implementation of the 'Congruent Matching Cells' Method cmdfun Framework for Building Interfaces to Shell Commands cmenet Bi-Level Selection of Conditional Main Effects CMF Collective Matrix Factorization cmfrec Collective Matrix Factorization for Recommender Systems CMFsurrogate Calibrated Model Fusion Approach to Combine Surrogate Markers cmhc Access, Retrieve, and Work with CMHC Data CMHNPA Cochran-Mantel-Haenszel and Nonparametric ANOVA cml Conditional Manifold Learning CMLS Constrained Multivariate Least Squares cmm Categorical Marginal Models cmmr CEU Mass Mediator RESTful API CMMs Compositional Mediation Model cmna Computational Methods for Numerical Analysis cmocean Beautiful Colour Maps for Oceanography CMplot Circle Manhattan Plot cmprsk Subdistribution Analysis of Competing Risks cmprskcoxmsm Use IPW to Estimate Treatment Effect under Competing Risks cmprskQR Analysis of Competing Risks Using Quantile Regressions cmpsR R Implementation of Congruent Matching Profile Segments Method cmR Analysis of Cardiac Magnetic Resonance Images cmrutils Misc Functions of the Center for Mathematical Research cms Calculate Medicare Reimbursement cmsaf A Toolbox for CM SAF NetCDF Data cmsafops Tools for CM SAF NetCDF Data cmsafvis Tools to Visualize CM SAF NetCDF Data CMShiny Interactive Document for Working with Confusion Matrix cmstatr Statistical Methods for Composite Material Data cmtest Conditional Moments Test cmvnorm The Complex Multivariate Gaussian Distribution cna Causal Modeling with Coincidence Analysis CNAIM Common Network Asset Indices Methodology [CNAIM] cnaOpt Optimizing Consistency and Coverage in Configurational Causal Modeling cnbdistr Conditional Negative Binomial Distribution cncaGUI Canonical Non-Symmetrical Correspondence Analysis in R CNLTreg Complex-Valued Wavelet Lifting for Signal Denoising CNLTtsa Complex-Valued Wavelet Lifting for Univariate and Bivariate Time Series Analysis cNORM Continuous Norming CNprep Pre-Process DNA Copy Number [CN] Data for Detection of CN Events CNPS Nonparametric Statistics cns Color Naming System cnum Chinese Numerals Processing CNVRG Dirichlet Multinomial Modeling of Relative Abundance Data CNVScope A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization coala A Framework for Coalescent Simulation coalescentMCMC MCMC Algorithms for the Coalescent coalitions Bayesian "Now-Cast" Estimation of Event Probabilities in Multi-Party Democracies coarseDataTools Analysis of Coarsely Observed Data cobalt Covariate Balance Tables and Plots cobiclust Biclustering via Latent Block Model Adapted to Overdispersed Count Data cobs Constrained B-Splines [Sparse Matrix Based] coca Cluster-of-Clusters Analysis cocktailApp 'shiny' App to Discover Cocktails CoClust Copula Based Cluster Analysis COCONUT COmbat CO-Normalization Using conTrols [COCONUT] cocor Comparing Correlations cocorresp Co-Correspondence Analysis Methods cocron Statistical Comparisons of Two or more Alpha Coefficients coda Output Analysis and Diagnostics for MCMC coda.base A Basic Set of Functions for Compositional Data Analysis coda4microbiome Compositional Data Analysis for Microbiome Studies codacore Learning Sparse Log-Ratios for Compositional Data codalm Transformation-Free Linear Regression for Compositional Outcomes and Predictors CodataGS Genomic Prediction Using SNP Codata cOde Automated C Code Generation for 'deSolve', 'bvpSolve' codebook Automatic Codebooks from Metadata Encoded in Dataset Attributes codebookr Create Codebooks from Data Frames codebreaker Retro Logic Game codeCollection Collection of Codes with Labels CodeDepends Analysis of R Code for Reproducible Research and Code Comprehension codemeta A Smaller 'codemetar' Package codemetar Generate 'CodeMeta' Metadata for R Packages codename Generation of Code Names for Organizations, People, Projects, and Whatever Else codep Multiscale Codependence Analysis coder Deterministic Categorization of Items Based on External Code Data codetools Code Analysis Tools for R codexcopd The CODEX [Comorbidity, Obstruction, Dyspnea, and Previous Severe Exacerbations] Index: Short and Medium-Term Prognosis in Patients Hospitalized for Chronic Obstructive Pulmonary Disease [COPD] Exacerbations codez Seq2Seq Encoder-Decoder Model for Time-Feature Analysis Based on Tensorflow codified Produce Standard/Formalized Demographics Tables CoDiNA Co-Expression Differential Network Analysis codingMatrices Alternative Factor Coding Matrices for Linear Model Formulae codyn Community Dynamics Metrics coefa Meta Analysis of Factor Analysis Based on CO-Occurrence Matrices coefficientalpha Robust Coefficient Alpha and Omega with Missing and Non-Normal Data coefplot Plots Coefficients from Fitted Models coenocliner Coenocline Simulation coenoflex Gradient-Based Coenospace Vegetation Simulator cofad Contrast Analyses for Factorial Designs cofeatureR Generate Cofeature Matrices coffee Chronological Ordering for Fossils and Environmental Events CoFRA Complete Functional Regulation Analysis coga Convolution of Gamma Distributions cogmapr Cognitive Mapping Tools Based on Coding of Textual Sources cognitoR Authentication for 'Shiny' Apps with 'Amazon Cognito' CohensdpLibrary Cohen's D_p Computation with Confidence Intervals cohortBuilder Data Source Agnostic Filtering Tools CohortPlat Simulation of Cohort Platform Trials for Combination Treatments cohorts Cohort Analysis Made Easy cohorttools Cohort Data Analyses coil Contextualization and Evaluation of COI-5P Barcode Data CoImp Copula Based Imputation Method coin Conditional Inference Procedures in a Permutation Test Framework coinmarketcapr Get 'Cryptocurrencies' Market Cap Prices from Coin Market Cap Coinprofile Coincident Profile COINr Composite Indicator Construction and Analysis cointmonitoR Consistent Monitoring of Stationarity and Cointegrating Relationships cointReg Parameter Estimation and Inference in a Cointegrating Regression cold Count Longitudinal Data colf Constrained Optimization on Linear Function collapse Advanced and Fast Data Transformation CollapseLevels Collapses Levels, Computes Information Value and WoE collapsibleTree Interactive Collapsible Tree Diagrams using 'D3.js' collateral Quickly Evaluate Captured Side Effects collatz Functions Related to the Collatz/Syracuse/3n+1 Problem collections High Performance Container Data Types collidr Check for Namespace Collisions Across Packages and Functions on CRAN collin Visualization the Effects of Collinearity in Distributed Lag Models and Other Linear Models CollocInfer Collocation Inference for Dynamic Systems collpcm Collapsed Latent Position Cluster Model for Social Networks collUtils Auxiliary Package for Package 'CollapsABEL' colmozzie Dengue Cases and Climate Variables in Colombo Sri Lanka coloc Colocalisation Tests of Two Genetic Traits colocalization Normalized Spatial Intensity Correlation colocalized Clusters of Colocalized Sequences colocr Conduct Co-Localization Analysis of Fluorescence Microscopy Images colorblindcheck Check Color Palettes for Problems with Color Vision Deficiency colorBlindness Safe Color Set for Color Blindness colorDF Colorful Data Frames in R Terminal colordistance Distance Metrics for Image Color Similarity colorednoise Simulate Temporally Autocorrelated Populations colorfindr Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format Images colorhcplot Colorful Hierarchical Clustering Dendrograms colorhex Colors and Palettes from Color-Hex colorist Coloring Wildlife Distributions in Space-Time colorizer Colorize Old Images Using the 'DeOldify' Image Colorization API colormap Color Palettes using Colormaps Node Module ColorNameR Give Colors a Name colorpatch Optimized Rendering of Fold Changes and Confidence Values colorr Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams colorRamps Builds Color Tables colorscience Color Science Methods and Data colorspace A Toolbox for Manipulating and Assessing Colors and Palettes colorSpec Color Calculations with Emphasis on Spectral Data colourlovers R Client for the COLOURlovers API colourpicker A Colour Picker Tool for Shiny and for Selecting Colours in Plots colourvalues Assigns Colours to Values colourvision Colour Vision Models COLP Causal Discovery for Categorical Data with Label Permutation colt Command-Line Color Themes comat Creates Co-Occurrence Matrices of Spatial Data comato Analysis of Concept Maps and Concept Landscapes COMBAT A Combined Association Test for Genes using Summary Statistics combinat combinatorics utilities combinationpvalues Combination of Independent P-Values combinatorics Introduction to Some Combinatorial Relations combinedevents Calculate Scores and Marks for Track and Field Combined Events CombinePortfolio Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies combinIT A Combined Interaction Test for Unreplicated Two-Way Tables CombinS Construction Methods of some Series of PBIB Designs combiroc Selection and Ranking of Omics Biomarkers Combinations Made Easy combiter Combinatorics Iterators comclim Community Climate Statistics cometExactTest Exact Test from the Combinations of Mutually Exclusive Alterations [CoMEt] Algorithm cometr 'Comet' API for R comf Models and Equations for Human Comfort Research comFuncs Commonly Used Functions for R Shiny Applications ComICS Computational Methods for Immune Cell-Type Subsets COMIX Coarsened Mixtures of Hierarchical Skew Kernels CommEcol Community Ecology Analyses commentr Print Nicely Formatted Comments for Use in Script Files CommKern Network-Based Communities and Kernel Machine Methods common Solutions for Common Problems in Base R CommonJavaJars Useful Libraries for Building a Java Based GUI under R commonmark High Performance CommonMark and Github Markdown Rendering in R CommonMean.Copula Common Mean Vector under Copula Models commonsMath JAR Files of the Apache Commons Mathematics Library communication Feature Extraction and Model Estimation for Audio of Human Speech comorbidity Computing Comorbidity Scores comorosmaps Comoro Islands Maps Comp2ROC Compare Two ROC Curves that Intersect Compack Regression with Compositional Covariates comparator Comparison Functions for Clustering and Record Linkage compare Comparing Objects for Differences compareC Compare Two Correlated C Indices with Right-Censored Survival Outcome CompareCausalNetworks Interface to Diverse Estimation Methods of Causal Networks CompAREdesign Statistical Functions for the Design of Studies with Composite Endpoints compareDF Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure compareGroups Descriptive Analysis by Groups compareMCMCs Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines comparer Compare Output and Run Time CompareTests Correct for Verification Bias in Diagnostic Accuracy & Agreement comparison Multivariate Likelihood Ratio Calculation and Evaluation ComparisonCR Comparison of Cumulative Incidence Between Two Groups Under Competing Risks ComparisonSurv Comparison of Survival Curves Between Two Groups compas Conformational Manipulations of Protein Atomic Structures CompDist Multisection Composite Distributions comperank Ranking Methods for Competition Results comperes Manage Competition Results competitiontoolbox A Graphical User Interface for Antitrust and Trade Practitioners compHclust Complementary Hierarchical Clustering compicc Calculate the Confidence Interval for the Difference of ICCs Compind Composite Indicators Functions completejourney Retail Shopping Data complexity Calculate the Proportion of Permutations in Line with an Informative Hypothesis complexNet Complex Network Generation complexplus Functions of Complex or Real Variable ComplexUpset Create Complex UpSet Plots Using 'ggplot2' Components complmrob Robust Linear Regression with Compositional Data as Covariates CompModels Pseudo Computer Models for Optimization COMPoissonReg Conway-Maxwell Poisson [COM-Poisson] Regression Compositional Compositional Data Analysis compositions Compositional Data Analysis composits Compositional, Multivariate and Univariate Time Series Outlier Ensemble compound.Cox Univariate Feature Selection and Compound Covariate for Predicting Survival CompoundEvents Statistical Modeling of Compound Events CompQuadForm Distribution Function of Quadratic Forms in Normal Variables CompR Paired Comparison Data Analysis comprehenr List Comprehensions compute.es Compute Effect Sizes comsimitv Flexible Framework for Simulating Community Assembly comtradr Interface with the United Nations Comtrade API con2aqi Calculate the AQI from Pollutant Concentration con2lki Calculate the Dutch Air Quality Index [LKI] Conake Continuous Associated Kernel Estimation concatenate Human-Friendly Text from Unknown Strings concatipede Easy Concatenation of Fasta Sequences concaveman A Very Fast 2D Concave Hull Algorithm conclust Pairwise Constraints Clustering concom Connected Components of an Undirected Graph ConConPiWiFun Optimisation with Continuous Convex Piecewise [Linear and Quadratic] Functions concordance Product Concordance ConcordanceTest An Alternative to the Kruskal-Wallis Based on the Kendall Tau Distance concorR CONCOR and Supplemental Functions concreg Concordance Regression concstats Market Structure, Concentration and Inequality Measures CONCUR Copy Number Profile Curve-Based Association Test cond Approximate Conditional Inference for Logistic and Loglinear Models CondCopulas Estimation and Inference for Conditional Copula Models condformat Conditional Formatting in Data Frames condGEE Parameter Estimation in Conditional GEE for Recurrent Event Gap Times CondIndTests Nonlinear Conditional Independence Tests condir Computation of P Values and Bayes Factors for Conditioning Data CondiS Censored Data Imputation for Direct Modeling conditionz Control How Many Times Conditions are Thrown condmixt Conditional Density Estimation with Neural Network Conditional Mixtures condMVNorm Conditional Multivariate Normal Distribution CondMVT Conditional Multivariate t Distribution, Expectation Maximization Algorithm, and Its Stochastic Variants condSURV Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data condTruncMVN Conditional Truncated Multivariate Normal Distribution conductor Create Tours in 'Shiny' Apps Using 'Shepherd.js' condusco Query-Driven Pipeline Execution and Query Templates condvis Conditional Visualization for Statistical Models condvis2 Interactive Conditional Visualization for Supervised and Unsupervised Models in Shiny coneproj Primal or Dual Cone Projections with Routines for Constrained Regression conf Visualization and Analysis of Statistical Measures of Confidence conf.design Construction of factorial designs confidence Confidence Estimation of Environmental State Classifications config Manage Environment Specific Configuration Values ConfigParser Package to Parse an INI File, Including Variable Interpolation configr An Implementation of Parsing and Writing Configuration File [JSON/INI/YAML/TOML] configural Multivariate Profile Analysis confinterpret Descriptive Interpretations of Confidence Intervals confintr Confidence Intervals ConfIntVariance Confidence Interval for the Univariate Population Variance without Normality Assumption conflicted An Alternative Conflict Resolution Strategy conflr Client for 'Confluence' API conformalbayes Jackknife[+] Predictive Intervals for Bayesian Models conformalClassification Transductive and Inductive Conformal Predictions for Classification Problems conformalInference.fd Tools for Conformal Inference for Regression in Multivariate Functional Setting conformalInference.multi Conformal Inference Tools for Regression with Multivariate Response ConformalSmallest Efficient Tuning-Free Conformal Prediction confoundr Diagnostics for Confounding of Time-Varying and Other Joint Exposures confreq Configural Frequencies Analysis Using Log-Linear Modeling confSAM Estimates and Bounds for the False Discovery Proportion, by Permutation ConfusionTableR Confusion Matrix Toolset congress Access the Congress.gov API CongreveLamsdell2016 Distance Metrics for Trees Generated by Congreve and Lamsdell CoNI Correlation Guided Network Integration [CoNI] conicfit Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov Conigrave Flexible Tools for Multiple Imputation conjoint An Implementation of Conjoint Analysis Method conjurer A Parametric Method for Generating Synthetic Data conleyreg Estimations using Conley Standard Errors conmet Construct Measurement Evaluation Tool ConNEcT Contingency Measure-Based Networks for Binary Time Series connectapi Utilities for Interacting with the 'RStudio Connect' Server API ConnectednessApproach Connectedness Approach connectwidgets Organize and Curate Your Content Within 'RStudio Connect' ConnMatTools Tools for Working with Connectivity Data conogive Congeneric Normal-Ogive Model conos Clustering on Network of Samples conover.test Conover-Iman Test of Multiple Comparisons Using Rank Sums conquer Convolution-Type Smoothed Quantile Regression conquestr An R Package to Extend 'ACER ConQuest' ConR Computation of Parameters Used in Preliminary Assessment of Conservation Status conserveR Identifying Conservation Prioritization Methods Based on Data Availability consolechoice An Easy and Quick Way to Loop a Character Vector as a Menu in the Console consort Create Consort Diagram consortr Interactive Consort Flow Diagrams ConSpline Partial Linear Least-Squares Regression using Constrained Splines ConsRank Compute the Median Ranking[s] According to the Kemeny's Axiomatic Approach ConsRankClass Classification and Clustering of Preference Rankings ConsReg Fits Regression & ARMA Models Subject to Constraints to the Coefficient constants Reference on Constants, Units and Uncertainty constellation Identify Event Sequences Using Time Series Joins conStruct Models Spatially Continuous and Discrete Population Genetic Structure contactdata Social Contact Matrices for 152 Countries ContaminatedMixt Clustering and Classification with the Contaminated Normal contentid An Interface for Content-Based Identifiers conText 'a la Carte' on Text [ConText] Embedding Regression contfrac Continued Fractions contFracR Continued Fraction Generators and Evaluators contingency Discrete Multivariate Probability Distributions contingencytables Statistical Analysis of Contingency Tables contoureR Contouring of Non-Regular Three-Dimensional Data ContourFunctions Create Contour Plots from Data or a Function contourPlot Plots x,y,z Co-Ordinates in a Contour Map contrast A Collection of Contrast Methods ContRespPP Predictive Probability for a Continuous Response with an ANOVA Structure contribution A Tiny Contribution Table Generator Based on 'ggplot2' control A Control Systems Toolbox controlfunctionIV Control Function Methods with Possibly Invalid Instrumental Variables controlTest Quantile Comparison for Two-Sample Right-Censored Survival Data contsurvplot Visualize the Effect of a Continuous Variable on a Time-to-Event Outcome contTimeCausal Continuous Time Causal Models convdistr Convolute Probabilistic Distributions ConvergenceClubs Finding Convergence Clubs ConvergenceConcepts Seeing Convergence Concepts in Action convertGraph Convert Graphical Files Format convertid Convert Gene IDs Between Each Other and Fetch Annotations from Biomart ConvertPar Estimating IRT Parameters via Machine Learning Algorithms convertr Convert Between Units convevol Analysis of Convergent Evolution convexjlr Disciplined Convex Programming in R using 'Convex.jl' convey Income Concentration Analysis with Complex Survey Samples Convolutioner Convolution of Data convoSPAT Convolution-Based Nonstationary Spatial Modeling cooccur Probabilistic Species Co-Occurrence Analysis in R cookies Use Browser Cookies with 'shiny' CoOL Causes of Outcome Learning cooltools Practical Tools for Scientific Computations and Visualizations coop Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations CoopGame Important Concepts of Cooperative Game Theory coopProductGame Cooperative Aspects of Linear Production Programming Problems CoordinateCleaner Automated Cleaning of Occurrence Records from Biological Collections copBasic General Bivariate Copula Theory and Many Utility Functions copCAR Fitting the copCAR Regression Model for Discrete Areal Data CopCTS Copula-Based Semiparametric Analysis for Time Series Data with Detection Limits cope Coverage Probability Excursion [CoPE] Sets copent Estimating Copula Entropy and Transfer Entropy CopernicusDEM Copernicus Digital Elevation Models coppeCosenzaR COPPE-Cosenza Fuzzy Hierarchy Model copre Tools for Nonparametric Martingale Posterior Sampling cops Cluster Optimized Proximity Scaling CopSens Copula-Based Sensitivity Analysis for Observational Causal Inference copula Multivariate Dependence with Copulas Copula.Markov Copula-Based Estimation and Statistical Process Control for Serially Correlated Time Series Copula.Markov.survival Copula Markov Model with Dependent Censoring Copula.surv Analysis of Bivariate Survival Data Based on Copulas copulaboost Fitting Additive Copula Regression Models for Binary Outcome Regression CopulaCenR Copula-Based Regression Models for Multivariate Censored Data copulaData Data Sets for Copula Modeling copulaedas Estimation of Distribution Algorithms Based on Copulas copulareg Copula Regression CopulaREMADA Copula Mixed Models for Multivariate Meta-Analysis of Diagnostic Test Accuracy Studies copulaSim Virtual Patient Simulation by Copula Invariance Property copyseparator Assembling Long Gene Copies from Short Read Data COR The COR for Optimal Subset Selection in Distributed Estimation cora Cora Data for Entity Resolution coRanking Co-Ranking Matrix corazon Apply 'colorffy' Color Gradients Within 'shiny' Elements Corbi Collection of Rudimentary Bioinformatics Tools CorBin Generate High-Dimensional Binary Data with Correlation Structures corclass Correlational Class Analysis cord Community Estimation in G-Models via CORD cordillera Calculation of the OPTICS Cordillera CORE Cores of Recurrent Events coreCT Programmatic Analysis of Sediment Cores Using Computed Tomography Imaging corehunter Multi-Purpose Core Subset Selection CORElearn Classification, Regression and Feature Evaluation corels R Binding for the 'Certifiably Optimal RulE ListS [Corels]' Learner coreNLP Wrappers Around Stanford CoreNLP Tools coreSim Core Functionality for Simulating Quantities of Interest from Generalised Linear Models corHMM Hidden Markov Models of Character Evolution corkscrew Preprocessor for Data Modeling corlink Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields CorMID Correct Mass Isotopologue Distribution Vectors corncob Count Regression for Correlated Observations with the Beta-Binomial CornerstoneR Collection of Scripts for Interface Between 'Cornerstone' and 'R' cornet Elastic Net with Dichotomised Outcomes coro 'Coroutines' for R coroICA Confounding Robust Independent Component Analysis for Noisy and Grouped Data corona Coronavirus ['Rona'] Data Exploration coronavirus The 2019 Novel Coronavirus COVID-19 [2019-nCoV] Dataset corpcor Efficient Estimation of Covariance and [Partial] Correlation corpora Statistics and Data Sets for Corpus Frequency Data corporaexplorer A 'Shiny' App for Exploration of Text Collections CoRpower Power Calculations for Assessing Correlates of Risk in Clinical Efficacy Trials corpus Text Corpus Analysis corpustools Managing, Querying and Analyzing Tokenized Text corr2D Implementation of 2D Correlation Analysis in R corrarray Correlation Arrays and 2-Sample Correlation Matrices CorrBin Nonparametrics with Clustered Binary and Multinomial Data corrcoverage Correcting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping corrDNA Finding Associations in Position-Wise Aligned DNA Sequence Dataset correctedAUC Correcting AUC for Measurement Error CorrectedFDR Correcting False Discovery Rates CorrectOverloadedPeaks Correct Overloaded Peaks from GC-APCI-MS Data corregp Functions and Methods for Correspondence Regression correlation Methods for Correlation Analysis correlationfunnel Speed Up Exploratory Data Analysis [EDA] with the Correlation Funnel correlbinom Correlated Binomial Probabilities Correlplot A Collection of Functions for Graphing Correlation Matrices correspondenceTables Creating Correspondence Tables Between Two Statistical Classifications corrgram Plot a Correlogram corrgrapher Explore Correlations Between Variables in a Machine Learning Model CorrMixed Estimate Correlations Between Repeatedly Measured Endpoints [E.g., Reliability] Based on Linear Mixed-Effects Models corrplot Visualization of a Correlation Matrix corrr Correlations in R corrsieve Software for Summarising and Evaluating STRUCTURE Output corrtable Creates and Saves Out a Correlation Table with Significance Levels Indicated CorrToolBox Modeling Correlational Magnitude Transformations in Discretization Contexts corset Arbitrary Bounding of Series and Time Series Objects cort Some Empiric and Nonparametric Copula Models corTest Robust Tests for Equal Correlation corTESTsrd Significance Testing of Rank Cross-Correlations under SRD corto Inference of Gene Regulatory Networks corx Create and Format Correlation Matrices cosa Bound Constrained Optimal Sample Size Allocation cosinor Tools for Estimating and Predicting the Cosinor Model cosinor2 Extended Tools for Cosinor Analysis of Rhythms cosmicsig Mutational Signatures from COSMIC [Catalogue of Somatic Mutations in Cancer] cosmoFns Functions for Cosmological Distances, Times, Luminosities, Etc CoSMoS Complete Stochastic Modelling Solution COST Copula-Based Semiparametric Models for Spatio-Temporal Data costat Time Series Costationarity Determination costsensitive Cost-Sensitive Multi-Class Classification CosW The CosW Distribution CoTiMA Continuous Time Meta-Analysis ['CoTiMA'] cotram Count Transformation Models cotrend Consistent Co-Trending Rank Selection couchDB Connect to and Work with CouchDB Databases COUNT Functions, Data and Code for Count Data countcolors Locates and Counts Pixels Within Color Range[s] in Images countdata The Beta-Binomial Test for Count Data countdown A Countdown Timer for HTML Presentations, Documents, and Web Apps Counterfactual Estimation and Inference Methods for Counterfactual Analysis Counternull Creating Null and Counternull Distributions to Find Counternull Values countfitteR Comprehensive Automatized Evaluation of Distribution Models for Count Data countgmifs Discrete Response Regression for High-Dimensional Data countHMM Penalized Estimation of Flexible Hidden Markov Models for Time Series of Counts countland Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq Countr Flexible Univariate Count Models Based on Renewal Processes countrycode Convert Country Names and Country Codes CountsEPPM Mean and Variance Modeling of Count Data countToFPKM Convert Counts to Fragments per Kilobase of Transcript per Million [FPKM] countTransformers Transform Counts in RNA-Seq Data Analysis covafillr Local Polynomial Regression of State Dependent Covariates in State-Space Models covatest Tests on Properties of Space-Time Covariance Functions covBM Brownian Motion Processes for 'nlme'-Models CovCombR Combine Partial Covariance / Relationship Matrices covdepGE Covariate Dependent Graph Estimation coveffectsplot Produce Forest Plots to Visualize Covariate Effects covequal Test for Equality of Covariance Matrices covfefe Covfefy Any Word, Sentence or Speech covglasso Sparse Covariance Matrix Estimation COVID19 R Interface to COVID-19 Data Hub covid19.analytics Load and Analyze Live Data from the COVID-19 Pandemic covid19br Brazilian COVID-19 Pandemic Data covid19brazil COVID-19 Dataset for Brazil covid19dbcand Selected 'Drugbank' Drugs for COVID-19 Treatment Related Data in R Format covid19france Cases of COVID-19 in France covid19india Pulling Clean Data from Covid19india.org covid19italy The 2019 Novel Coronavirus COVID-19 [2019-nCoV] Italy Dataset covid19sf The Covid19 San Francisco Dataset covid19srilanka The 2019 Novel Coronavirus COVID-19 [2019-nCoV] Data in Sri Lanka covid19swiss COVID-19 Cases in Switzerland and Principality of Liechtenstein covid19us Cases of COVID-19 in the United States covidcast Client for Delphi's 'COVIDcast Epidata' API COVIDIBGE Downloading, Reading and Analyzing PNAD COVID19 Microdata CovidMutations Mutation Analysis Toolkit for COVID-19 [Coronavirus Disease 2019] covidmx Descarga y analiza datos de COVID-19 en México covidprobability Estimate the Unit-Wide Probability of COVID-19 covidsymptom COVID Symptom Study Sweden Open Dataset covKCD Covariance Estimation for Matrix Data with the Kronecker-Core Decomposition covr Test Coverage for Packages CovRegRF Covariance Regression with Random Forests covRobust Robust Covariance Estimation via Nearest Neighbor Cleaning CovSel Model-Free Covariate Selection covsep Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable covsim VITA, IG and PLSIM Simulation for Given Covariance and Marginals covTestR Covariance Matrix Tests CovTools Statistical Tools for Covariance Analysis cowbell Performs Segmented Linear Regression on Two Independent Variables cowplot Streamlined Plot Theme and Plot Annotations for 'ggplot2' cowsay Messages, Warnings, Strings with Ascii Animals CoxBcv Bias-Corrected Sandwich Variance Estimators for Marginal Cox Analysis of Cluster Randomized Trials coxed Duration-Based Quantities of Interest for the Cox Proportional Hazards Model CoxICPen Variable Selection for Cox's Model with Interval-Censored Data coxme Mixed Effects Cox Models coxphf Cox Regression with Firth's Penalized Likelihood coxphMIC Sparse Estimation of Cox Proportional Hazards Models via Approximated Information Criterion coxphSGD Stochastic Gradient Descent log-Likelihood Estimation in Cox Proportional Hazards Model coxphw Weighted Estimation in Cox Regression CoxPlus Cox Regression [Proportional Hazards Model] with Multiple Causes and Mixed Effects CoxR2 R-Squared Measure Based on Partial LR Statistic, for the Cox PH Regression Model coxrobust Fit Robustly Proportional Hazards Regression Model coxrt Cox Proportional Hazards Regression for Right-Truncated Data coxsei Fitting a CoxSEI Model CP Conditional Power Calculations cp4p Calibration Plot for Proteomics cpa Confirmatory Path Analysis Through 'd-sep' Tests CPAT Change Point Analysis Tests CPBayes Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations CPC Implementation of Cluster-Polarization Coefficient cpca Methods to perform Common Principal Component Analysis [CPCA] cPCG Efficient and Customized Preconditioned Conjugate Gradient Method for Solving System of Linear Equations cpd Complex Pearson Distributions cpfa Classification with Parallel Factor Analysis CpGassoc Association Between Methylation and a Phenotype of Interest CpGFilter CpG Filtering Method Based on Intra-Class Correlation Coefficients CPGLIB Competing Proximal Gradients Library cpi Conditional Predictive Impact cpk Clinical Pharmacokinetics cplm Compound Poisson Linear Models cplots Plots for Circular Data cpm Sequential and Batch Change Detection Using Parametric and Nonparametric Methods CPMCGLM Correction of the P-Value after Multiple Coding in Generalized Linear Models CpmERCCutoff Calculation of Log2 Counts per Million Cutoff from ERCC Controls CPNCoverageAnalysis Conceptual Properties Norming Studies as Parameter Estimation cpop Detection of Multiple Changes in Slope in Univariate Time-Series CPP Composition of Probabilistic Preferences [CPP] cpp11 A C++11 Interface for R's C Interface cppcheckR Check 'C' and 'C++' Files using 'Cppcheck' cppRouting Fast Implementation of Dijkstra Algorithm cpr Control Polygon Reduction Cprob The Conditional Probability Function of a Competing Event cprobit Conditional Probit Model for Analysing Continuous Outcomes cprr Functions for Working with Danish CPR Numbers cPseudoMaRg Constructs a Correlated Pseudo-Marginal Sampler cpsR Load CPS Microdata into R Using the 'Census Bureau Data' API cpss Change-Point Detection by Sample-Splitting Methods CPsurv Nonparametric Change Point Estimation for Survival Data cpsurvsim Simulating Survival Data from Change-Point Hazard Distributions cpsvote A Toolbox for Using the CPS’s Voting and Registration Supplement cpt Classification Permutation Test cptcity 'cpt-city' Colour Gradients cqcr Access 'Care Quality Commission' Data cqrReg Quantile, Composite Quantile Regression and Regularized Versions cquad Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data CR2 Compute Cluster Robust Standard Errors with Degrees of Freedom Adjustments CRABS Congruent Rate Analyses in Birth-Death Scenarios cragg Tests for Weak Instruments in R cramer Multivariate Nonparametric Cramer-Test for the Two-Sample-Problem crandep Network Analysis of Dependencies of CRAN Packages crank Completing Ranks cranlike Tools for 'CRAN'-Like Repositories cranlogs Download Logs from the 'RStudio' 'CRAN' Mirror cranly Package Directives and Collaboration Networks in CRAN CRANsearcher RStudio Addin for Searching Packages in CRAN Database Based on Keywords crassmat Conditional Random Sampling Sparse Matrices crawl Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data crayon Colored Terminal Output crch Censored Regression with Conditional Heteroscedasticity crctStepdown Univariate Analysis of Cluster Trials with Multiple Outcomes CRE Interpretable Subgroups Identification Through Ensemble Learning of Causal Rules CREAM Clustering of Genomic Regions Analysis Method credentials Tools for Managing SSH and Git Credentials creditmodel Toolkit for Credit Modeling, Analysis and Visualization CREDS Calibrated Ratio Estimator under Double Sampling Design credsubs Credible Subsets credule Credit Default Swap Functions cregg Simple Conjoint Tidying, Analysis, and Visualization cRegulome Obtain and Visualize Regulome-Gene Expression Correlations in Cancer crestr A Probabilistic Approach to Reconstruct Past Climates Using Palaeoecological Datasets CRF Conditional Random Fields crfsuite Conditional Random Fields for Labelling Sequential Data in Natural Language Processing cricketdata International Cricket Data cricketr Analyze Cricketers and Cricket Teams Based on ESPN Cricinfo Statsguru crimCV Group-Based Modelling of Longitudinal Data crimedata Access Crime Data from the Open Crime Database crimelinkage Statistical Methods for Crime Series Linkage crimeutils A Comprehensive Set of Functions to Clean, Analyze, and Present Crime Data crisp Fits a Model that Partitions the Covariate Space into Blocks in a Data- Adaptive Way crispRdesignR Guide Sequence Design for CRISPR/Cas9 criticality Modeling Fissile Material Operations in Nuclear Facilities criticalpath An Implementation of the Critical Path Method critpath Setting the Critical Path CRM Continual Reassessment Method [CRM] for Phase I Clinical Trials crmn CCMN and Other Normalization Methods for Metabolomics Data crmPack Object-Oriented Implementation of CRM Designs crmReg Cellwise Robust M-Regression and SPADIMO crochet Implementation Helper for '[' and '[